Analysis of interatomic Contacts of Structural Units in PDB entry:
9JG8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JG8 entry

There are 6 chains in PDB entry 9JG8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 2	LYS 156
C	LYS 130	ALA 407
A	ASN 6	GLN 243
G	SER 570	GLN 618
E	SER 570	ALA 617
F	SER 570	ALA 617

There are 12 helices in PDB entry 9JG8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	118	125	Right-handed alpha
Helix 2	AA2	B	126	128	Right-handed 310
Helix 3	AA3	B	129	134	Right-handed alpha
Helix 4	AA4	B	138	143	Right-handed 310
Helix 5	AA5	C	208	212	Right-handed 310
Helix 6	AA6	C	336	347	Right-handed alpha
Helix 7	AA7	C	375	379	Right-handed 310
Helix 8	AA8	A	63	74	Right-handed alpha
Helix 9	AA9	A	95	113	Right-handed alpha
Helix 10	AB1	A	115	130	Right-handed alpha
Helix 11	AB2	A	131	139	Right-handed alpha
Helix 12	AB3	A	142	149	Right-handed alpha

There are 14 sheets in PDB entry 9JG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	12	15	anti-parallel
Strand 3	B	106	107	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	F	614	615	parallel
Strand 3	G	606	610	parallel
Strand 4	E	599	602	parallel
Strand 5	F	590	594	parallel
Strand 6	G	583	587	parallel
Strand 7	E	575	578	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	66	67	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	145	first strand
Strand 2	C	242	248	parallel
Strand 3	C	215	219	anti-parallel
Strand 4	C	172	176	anti-parallel
Strand 5	C	183	185	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	200	203	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	263	first strand
Strand 2	C	285	293	anti-parallel
Strand 3	C	329	335	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	280	first strand
Strand 2	C	380	383	parallel
Strand 3	C	355	364	anti-parallel
Strand 4	C	298	307	anti-parallel
Strand 5	C	323	325	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	318	first strand
Strand 2	C	298	307	anti-parallel
Strand 3	C	355	364	anti-parallel
Strand 4	C	372	373	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	56	first strand
Strand 2	A	24	34	anti-parallel
Strand 3	A	7	18	anti-parallel
Strand 4	A	229	237	anti-parallel
Strand 5	A	215	222	anti-parallel
Strand 6	A	199	206	anti-parallel
Strand 7	A	189	190	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	56	first strand
Strand 2	A	24	34	anti-parallel
Strand 3	A	7	18	anti-parallel
Strand 4	A	241	242	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	89	92	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	160	first strand
Strand 2	A	170	174	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	575	578	first strand
Strand 2	F	583	587	parallel
Strand 3	E	590	594	parallel
Strand 4	G	598	602	parallel
Strand 5	F	606	609	parallel
Strand 6	E	614	617	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	607	610	first strand
Strand 2	F	598	602	parallel
Strand 3	G	590	594	parallel
Strand 4	E	583	587	parallel
Strand 5	F	575	578	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JG8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JG8