Analysis of interatomic Contacts of Structural Units in PDB entry:
9JH5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JH5 entry

There are 6 chains in PDB entry 9JH5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	GLU 34	LEU 316
C	SER 8	GLU 63
S	VAL 2	LEU 247
A	CYS 3	VAL 394
B	GLU 3	ASN 340
N	GLN 1	SER 128

There are 27 helices in PDB entry 9JH5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	43	64	Right-handed alpha
Helix 2	AA2	R	73	100	Right-handed alpha
Helix 3	AA3	R	103	108	Right-handed alpha
Helix 4	AA4	R	109	119	Right-handed alpha
Helix 5	AA5	R	119	142	Right-handed alpha
Helix 6	AA6	R	155	171	Right-handed alpha
Helix 7	AA7	R	198	210	Right-handed alpha
Helix 8	AA8	R	210	230	Right-handed alpha
Helix 9	AA9	R	238	270	Right-handed alpha
Helix 10	AB1	R	280	307	Right-handed alpha
Helix 11	AB2	R	309	316	Right-handed alpha
Helix 12	AB3	C	9	24	Right-handed alpha
Helix 13	AB4	C	29	45	Right-handed alpha
Helix 14	AB5	C	46	48	Right-handed 310
Helix 15	AB6	S	28	32	Right-handed 310
Helix 16	AB7	S	191	193	Right-handed 310
Helix 17	AB8	A	6	39	Right-handed alpha
Helix 18	AB9	A	52	64	Right-handed alpha
Helix 19	AC1	A	233	239	Right-handed 310
Helix 20	AC2	A	266	278	Right-handed alpha
Helix 21	AC3	A	293	303	Right-handed alpha
Helix 22	AC4	A	331	353	Right-handed alpha
Helix 23	AC5	A	370	391	Right-handed alpha
Helix 24	AC6	B	4	25	Right-handed alpha
Helix 25	AC7	B	29	34	Right-handed alpha
Helix 26	AC8	N	28	32	Right-handed 310
Helix 27	AC9	N	61	65	Right-handed 310

There are 18 sheets in PDB entry 9JH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	5	6	first strand
Strand 2	S	22	23	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	12	first strand
Strand 2	S	118	119	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	45	51	first strand
Strand 2	S	33	39	anti-parallel
Strand 3	S	93	95	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	45	51	first strand
Strand 2	S	33	39	anti-parallel
Strand 3	S	97	99	anti-parallel
Strand 4	S	110	111	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	140	142	first strand
Strand 2	S	158	161	anti-parallel
Strand 3	S	211	215	anti-parallel
Strand 4	S	204	206	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	177	178	first strand
Strand 2	S	186	187	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	189	190	first strand
Strand 2	S	194	195	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	225	227	first strand
Strand 2	S	243	245	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	213	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	245	249	parallel
Strand 5	A	290	292	parallel
Strand 6	A	362	363	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	113	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	303	308	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	46	49	first strand
Strand 2	N	35	39	anti-parallel
Strand 3	N	93	97	anti-parallel
Strand 4	N	122	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JH5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JH5