Analysis of interatomic Contacts of Structural Units in PDB entry:
9JH8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JH8 entry

There are 3 chains in PDB entry 9JH8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7LEU 751
C
 T 1 A 17
E
 A 1 G 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 9JH8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 54Right-handed alpha
Helix 2
AA2
A
97 115Right-handed alpha
Helix 3
AA3
A
187 193Right-handed alpha
Helix 4
AA4
A
233 240Right-handed alpha
Helix 5
AA5
A
243 248Right-handed alpha
Helix 6
AA6
A
272 274Right-handed 310
Helix 7
AA7
A
281 289Right-handed alpha
Helix 8
AA8
A
289 301Right-handed alpha
Helix 9
AA9
A
303 319Right-handed alpha
Helix 10
AB1
A
364 369Right-handed alpha
Helix 11
AB2
A
388 404Right-handed alpha
Helix 12
AB3
A
439 453Right-handed alpha
Helix 13
AB4
A
474 485Right-handed alpha
Helix 14
AB5
A
494 503Right-handed alpha
Helix 15
AB6
A
505 523Right-handed alpha
Helix 16
AB7
A
583 603Right-handed alpha
Helix 17
AB8
A
620 631Right-handed alpha
Helix 18
AB9
A
698 712Right-handed alpha
Helix 19
AC1
A
723 735Right-handed alpha
Helix 20
AC2
A
736 739Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 9JH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
648 652anti-parallel
Strand 3
A
655 657anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
132 135anti-parallel
Strand 3
A
154 166anti-parallel
Strand 4
A
172 184anti-parallel
Strand 5
A
14 18anti-parallel
Strand 6
A
327 329anti-parallel
Strand 7
A
320 321anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
67 69anti-parallel
Strand 3
A
25 30anti-parallel
Strand 4
A
85 91anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
122 123anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
145 146anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 271first strand
Strand 2
A
258 263anti-parallel
Strand 3
A
214 223anti-parallel
Strand 4
A
202 205anti-parallel
Strand 5
A
276 278anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
352 354anti-parallel
Strand 3
A
529 530anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 379first strand
Strand 2
A
423 424parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
434 435parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
411 412anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
492 493parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 560first strand
Strand 2
A
539 543anti-parallel
Strand 3
A
609 613parallel
Strand 4
A
635 641parallel
Strand 5
A
688 694anti-parallel
Strand 6
A
670 673anti-parallel
Strand 7
A
664 667anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il