Analysis of interatomic Contacts of Structural Units in PDB entry:
9JH9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JH9 entry

There are 6 chains in PDB entry 9JH9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 7	LEU 751
C	T 1	A 17
E	A 1	G 18
B	VAL 7	LEU 751
D	T 1	A 17
F	A 1	G 18

There are 40 helices in PDB entry 9JH9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	54	Right-handed alpha
Helix 2	AA2	A	97	115	Right-handed alpha
Helix 3	AA3	A	187	195	Right-handed alpha
Helix 4	AA4	A	233	241	Right-handed alpha
Helix 5	AA5	A	251	256	Right-handed alpha
Helix 6	AA6	A	281	289	Right-handed alpha
Helix 7	AA7	A	289	296	Right-handed alpha
Helix 8	AA8	A	303	319	Right-handed alpha
Helix 9	AA9	A	322	325	Right-handed 310
Helix 10	AB1	A	361	363	Right-handed 310
Helix 11	AB2	A	364	369	Right-handed alpha
Helix 12	AB3	A	388	404	Right-handed alpha
Helix 13	AB4	A	439	451	Right-handed alpha
Helix 14	AB5	A	474	486	Right-handed alpha
Helix 15	AB6	A	494	503	Right-handed alpha
Helix 16	AB7	A	506	523	Right-handed alpha
Helix 17	AB8	A	583	603	Right-handed alpha
Helix 18	AB9	A	620	630	Right-handed alpha
Helix 19	AC1	A	698	711	Right-handed alpha
Helix 20	AC2	A	723	735	Right-handed alpha
Helix 21	AC3	B	43	54	Right-handed alpha
Helix 22	AC4	B	97	115	Right-handed alpha
Helix 23	AC5	B	187	195	Right-handed alpha
Helix 24	AC6	B	233	241	Right-handed alpha
Helix 25	AC7	B	251	256	Right-handed alpha
Helix 26	AC8	B	281	289	Right-handed alpha
Helix 27	AC9	B	289	296	Right-handed alpha
Helix 28	AD1	B	303	319	Right-handed alpha
Helix 29	AD2	B	322	325	Right-handed 310
Helix 30	AD3	B	361	363	Right-handed 310
Helix 31	AD4	B	364	369	Right-handed alpha
Helix 32	AD5	B	388	404	Right-handed alpha
Helix 33	AD6	B	439	451	Right-handed alpha
Helix 34	AD7	B	474	486	Right-handed alpha
Helix 35	AD8	B	494	503	Right-handed alpha
Helix 36	AD9	B	506	523	Right-handed alpha
Helix 37	AE1	B	583	603	Right-handed alpha
Helix 38	AE2	B	620	630	Right-handed alpha
Helix 39	AE3	B	698	711	Right-handed alpha
Helix 40	AE4	B	723	735	Right-handed alpha

There are 24 sheets in PDB entry 9JH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	648	651	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	132	135	anti-parallel
Strand 3	A	154	166	anti-parallel
Strand 4	A	148	149	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	132	135	anti-parallel
Strand 3	A	154	166	anti-parallel
Strand 4	A	171	184	anti-parallel
Strand 5	A	14	20	anti-parallel
Strand 6	A	327	329	anti-parallel
Strand 7	A	320	321	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	66	69	anti-parallel
Strand 3	A	25	30	anti-parallel
Strand 4	A	85	91	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	122	123	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	145	146	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	271	first strand
Strand 2	A	260	263	anti-parallel
Strand 3	A	214	216	anti-parallel
Strand 4	A	202	205	anti-parallel
Strand 5	A	276	278	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	346	first strand
Strand 2	A	663	667	anti-parallel
Strand 3	A	670	674	anti-parallel
Strand 4	A	688	694	anti-parallel
Strand 5	A	634	641	anti-parallel
Strand 6	A	608	614	parallel
Strand 7	A	539	543	parallel
Strand 8	A	558	562	anti-parallel
Strand 9	A	567	571	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	359	first strand
Strand 2	A	352	353	anti-parallel
Strand 3	A	529	530	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	385	first strand
Strand 2	A	432	435	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	411	412	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	463	first strand
Strand 2	A	492	493	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	648	651	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	132	135	anti-parallel
Strand 3	B	154	166	anti-parallel
Strand 4	B	148	149	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	132	135	anti-parallel
Strand 3	B	154	166	anti-parallel
Strand 4	B	171	184	anti-parallel
Strand 5	B	14	20	anti-parallel
Strand 6	B	327	329	anti-parallel
Strand 7	B	320	321	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	66	69	anti-parallel
Strand 3	B	25	30	anti-parallel
Strand 4	B	85	91	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	122	123	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	145	146	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	271	first strand
Strand 2	B	260	263	anti-parallel
Strand 3	B	214	216	anti-parallel
Strand 4	B	202	205	anti-parallel
Strand 5	B	276	278	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	346	first strand
Strand 2	B	663	667	anti-parallel
Strand 3	B	670	674	anti-parallel
Strand 4	B	688	694	anti-parallel
Strand 5	B	634	641	anti-parallel
Strand 6	B	608	614	parallel
Strand 7	B	539	543	parallel
Strand 8	B	558	562	anti-parallel
Strand 9	B	567	571	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	359	first strand
Strand 2	B	352	353	anti-parallel
Strand 3	B	529	530	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	385	first strand
Strand 2	B	432	435	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	411	412	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	463	first strand
Strand 2	B	492	493	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JH9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JH9