Analysis of interatomic Contacts of Structural Units in PDB entry:
9JHK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JHK entry

There are 3 chains in PDB entry 9JHK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7LEU 751
C
 T 1 T 21
E
 C -1 T 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9JHK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 42Right-handed 310
Helix 2
AA2
A
43 54Right-handed alpha
Helix 3
AA3
A
98 115Right-handed alpha
Helix 4
AA4
A
187 194Right-handed alpha
Helix 5
AA5
A
233 240Right-handed alpha
Helix 6
AA6
A
244 249Right-handed alpha
Helix 7
AA7
A
251 256Right-handed alpha
Helix 8
AA8
A
281 289Right-handed alpha
Helix 9
AA9
A
289 301Right-handed alpha
Helix 10
AB1
A
303 319Right-handed alpha
Helix 11
AB2
A
364 369Right-handed alpha
Helix 12
AB3
A
388 404Right-handed alpha
Helix 13
AB4
A
439 451Right-handed alpha
Helix 14
AB5
A
474 485Right-handed alpha
Helix 15
AB6
A
494 503Right-handed alpha
Helix 16
AB7
A
508 522Right-handed alpha
Helix 17
AB8
A
584 603Right-handed alpha
Helix 18
AB9
A
620 631Right-handed alpha
Helix 19
AC1
A
698 711Right-handed alpha
Helix 20
AC2
A
723 735Right-handed alpha
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There are 12 sheets in PDB entry 9JHK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
648 652anti-parallel
Strand 3
A
655 657anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
172 175anti-parallel
Strand 3
A
14 18anti-parallel
Strand 4
A
327 329anti-parallel
Strand 5
A
320 321anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
67 69anti-parallel
Strand 3
A
27 32anti-parallel
Strand 4
A
83 86anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
122 123anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
132 135anti-parallel
Strand 3
A
154 161anti-parallel
Strand 4
A
179 184anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 271first strand
Strand 2
A
260 263anti-parallel
Strand 3
A
214 216anti-parallel
Strand 4
A
202 205anti-parallel
Strand 5
A
276 278anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 346first strand
Strand 2
A
663 666anti-parallel
Strand 3
A
670 673anti-parallel
Strand 4
A
688 694anti-parallel
Strand 5
A
634 641anti-parallel
Strand 6
A
608 614parallel
Strand 7
A
539 544parallel
Strand 8
A
558 560anti-parallel
Strand 9
A
569 571anti-parallel
Strand 10
A
744 745anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
352 353anti-parallel
Strand 3
A
529 530anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
378 385parallel
Strand 3
A
432 435parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
378 385parallel
Strand 3
A
458 459parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
411 412anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
492 493parallel
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