Analysis of interatomic Contacts of Structural Units in PDB entry:
9JHP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JHP entry

There are 5 chains in PDB entry 9JHP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	GLN 230
B	GLU 3	ASN 340
S	VAL 2	LEU 248
C	THR 6	ARG 62
R	GLY 8	ASP 296

There are 26 helices in PDB entry 9JHP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	32	Right-handed alpha
Helix 2	AA2	A	45	55	Right-handed alpha
Helix 3	AA3	A	94	98	Right-handed 310
Helix 4	AA4	A	114	130	Right-handed alpha
Helix 5	AA5	A	148	153	Right-handed alpha
Helix 6	AA6	A	157	161	Right-handed 310
Helix 7	AA7	A	171	187	Right-handed alpha
Helix 8	AA8	A	206	228	Right-handed alpha
Helix 9	AA9	B	4	25	Right-handed alpha
Helix 10	AB1	B	29	34	Right-handed alpha
Helix 11	AB2	S	87	91	Right-handed 310
Helix 12	AB3	C	7	24	Right-handed alpha
Helix 13	AB4	C	29	44	Right-handed alpha
Helix 14	AB5	C	45	48	Right-handed 310
Helix 15	AB6	R	18	48	Right-handed alpha
Helix 16	AB7	R	51	79	Right-handed alpha
Helix 17	AB8	R	86	98	Right-handed alpha
Helix 18	AB9	R	99	120	Right-handed alpha
Helix 19	AC1	R	130	149	Right-handed alpha
Helix 20	AC2	R	150	155	Right-handed alpha
Helix 21	AC3	R	177	188	Right-handed alpha
Helix 22	AC4	R	190	210	Right-handed alpha
Helix 23	AC5	R	215	254	Right-handed alpha
Helix 24	AC6	R	258	276	Right-handed alpha
Helix 25	AC7	R	277	287	Right-handed alpha
Helix 26	AC8	R	290	296	Right-handed alpha

There are 15 sheets in PDB entry 9JHP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	75	first strand
Strand 2	A	80	86	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	105	110	parallel
Strand 5	A	138	143	parallel
Strand 6	A	195	199	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	221	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	12	first strand
Strand 2	S	118	119	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	58	60	first strand
Strand 2	S	45	51	anti-parallel
Strand 3	S	33	39	anti-parallel
Strand 4	S	93	99	anti-parallel
Strand 5	S	110	111	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	141	142	first strand
Strand 2	S	156	162	anti-parallel
Strand 3	S	212	217	anti-parallel
Strand 4	S	204	209	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	167	168	first strand
Strand 2	S	172	173	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	195	196	first strand
Strand 2	S	187	191	anti-parallel
Strand 3	S	175	180	anti-parallel
Strand 4	S	227	232	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	158	160	first strand
Strand 2	R	166	168	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JHP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JHP