Analysis of interatomic Contacts of Structural Units in PDB entry:
9JHQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JHQ entry

There is 1 chain in PDB entry 9JHQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6VAL 867
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9JHQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed alpha
Helix 2
AA2
A
42 70Right-handed alpha
Helix 3
AA3
A
80 94Right-handed alpha
Helix 4
AA4
A
98 110Right-handed alpha
Helix 5
AA5
A
113 158Right-handed alpha
Helix 6
AA6
A
161 169Right-handed alpha
Helix 7
AA7
A
169 178Right-handed alpha
Helix 8
AA8
A
189 204Right-handed alpha
Helix 9
AA9
A
263 275Right-handed alpha
Helix 10
AB1
A
277 282Right-handed alpha
Helix 11
AB2
A
325 332Right-handed alpha
Helix 12
AB3
A
339 346Right-handed alpha
Helix 13
AB4
A
349 360Right-handed alpha
Helix 14
AB5
A
375 388Right-handed alpha
Helix 15
AB6
A
397 416Right-handed alpha
Helix 16
AB7
A
421 444Right-handed alpha
Helix 17
AB8
A
451 455Right-handed 310
Helix 18
AB9
A
471 490Right-handed alpha
Helix 19
AC1
A
496 511Right-handed alpha
Helix 20
AC2
A
518 530Right-handed alpha
Helix 21
AC3
A
531 536Right-handed alpha
Helix 22
AC4
A
537 552Right-handed alpha
Helix 23
AC5
A
600 605Right-handed alpha
Helix 24
AC6
A
611 625Right-handed alpha
Helix 25
AC7
A
642 646Right-handed 310
Helix 26
AC8
A
671 673Right-handed 310
Helix 27
AC9
A
689 691Right-handed 310
Helix 28
AD1
A
703 707Right-handed 310
Helix 29
AD2
A
709 719Right-handed alpha
Helix 30
AD3
A
764 768Right-handed 310
Helix 31
AD4
A
776 792Right-handed alpha
Helix 32
AD5
A
821 830Right-handed alpha
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There are 10 sheets in PDB entry 9JHQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
858 866anti-parallel
Strand 3
A
24 30anti-parallel
Strand 4
A
213 219anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
858 866anti-parallel
Strand 3
A
563 569anti-parallel
Strand 4
A
589 596anti-parallel
Strand 5
A
754 757parallel
Strand 6
A
749 751anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 262first strand
Strand 2
A
459 465anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 338first strand
Strand 2
A
285 288anti-parallel
Strand 3
A
363 365anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
298 309anti-parallel
Strand 3
A
312 321anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 495first strand
Strand 2
A
721 723anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 516first strand
Strand 2
A
674 678anti-parallel
Strand 3
A
683 687anti-parallel
Strand 4
A
693 698anti-parallel
Strand 5
A
631 635parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
655 656first strand
Strand 2
A
668 669parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
744 746first strand
Strand 2
A
760 763anti-parallel
Strand 3
A
838 843anti-parallel
Strand 4
A
796 805anti-parallel
Strand 5
A
808 811anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
744 746first strand
Strand 2
A
760 763anti-parallel
Strand 3
A
838 843anti-parallel
Strand 4
A
796 805anti-parallel
Strand 5
A
815 818anti-parallel
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