Analysis of interatomic Contacts of Structural Units in PDB entry:
9JHT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JHT entry

There are 2 chains in PDB entry 9JHT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 6GLY 303
B
 THR 5GLY 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9JHT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 17Right-handed 310
Helix 2
AA2
A
18 27Right-handed alpha
Helix 3
AA3
A
83 83Right-handed alpha
Helix 4
AA4
A
90 104Right-handed alpha
Helix 5
AA5
A
105 123Right-handed alpha
Helix 6
AA6
A
126 131Right-handed alpha
Helix 7
AA7
A
132 153Right-handed alpha
Helix 8
AA8
A
160 182Right-handed alpha
Helix 9
AA9
A
183 191Right-handed 310
Helix 10
AB1
A
205 234Right-handed alpha
Helix 11
AB2
A
236 270Right-handed alpha
Helix 12
AB3
A
280 294Right-handed alpha
Helix 13
AB4
A
295 302Right-handed alpha
Helix 14
AB5
B
14 17Right-handed 310
Helix 15
AB6
B
18 27Right-handed alpha
Helix 16
AB7
B
91 104Right-handed alpha
Helix 17
AB8
B
107 117Right-handed alpha
Helix 18
AB9
B
117 126Right-handed alpha
Helix 19
AC1
B
127 130Right-handed 310
Helix 20
AC2
B
131 154Right-handed alpha
Helix 21
AC3
B
160 188Right-handed alpha
Helix 22
AC4
B
204 234Right-handed alpha
Helix 23
AC5
B
236 264Right-handed alpha
Helix 24
AC6
B
266 270Right-handed 310
Helix 25
AC7
B
278 294Right-handed alpha
Helix 26
AC8
B
295 302Right-handed alpha
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There are 4 sheets in PDB entry 9JHT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
58 63anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
37 39anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 12first strand
Strand 2
B
58 64anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
36 39anti-parallel
Strand 3
B
52 55anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il