Analysis of interatomic Contacts of Structural Units in PDB entry:
9JHY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JHY entry

There are 3 chains in PDB entry 9JHY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 0ASN 289
A
 MET 1ASP 288
B
 MET 1ASN 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9JHY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
9 21Right-handed alpha
Helix 2
AA2
C
33 55Right-handed alpha
Helix 3
AA3
C
58 67Right-handed alpha
Helix 4
AA4
C
73 78Right-handed alpha
Helix 5
AA5
C
91 106Right-handed alpha
Helix 6
AA6
C
120 125Right-handed alpha
Helix 7
AA7
C
156 170Right-handed alpha
Helix 8
AA8
C
184 202Right-handed alpha
Helix 9
AA9
C
206 218Right-handed alpha
Helix 10
AB1
C
223 232Right-handed alpha
Helix 11
AB2
C
232 248Right-handed alpha
Helix 12
AB3
C
249 253Right-handed 310
Helix 13
AB4
C
255 264Right-handed alpha
Helix 14
AB5
C
268 272Right-handed 310
Helix 15
AB6
A
9 21Right-handed alpha
Helix 16
AB7
A
33 54Right-handed alpha
Helix 17
AB8
A
58 68Right-handed alpha
Helix 18
AB9
A
73 78Right-handed alpha
Helix 19
AC1
A
91 106Right-handed alpha
Helix 20
AC2
A
120 125Right-handed alpha
Helix 21
AC3
A
156 170Right-handed alpha
Helix 22
AC4
A
184 202Right-handed alpha
Helix 23
AC5
A
206 219Right-handed alpha
Helix 24
AC6
A
223 232Right-handed alpha
Helix 25
AC7
A
232 248Right-handed alpha
Helix 26
AC8
A
249 253Right-handed 310
Helix 27
AC9
A
255 264Right-handed alpha
Helix 28
AD1
B
9 21Right-handed alpha
Helix 29
AD2
B
33 54Right-handed alpha
Helix 30
AD3
B
58 66Right-handed alpha
Helix 31
AD4
B
77 81Right-handed 310
Helix 32
AD5
B
91 106Right-handed alpha
Helix 33
AD6
B
120 125Right-handed alpha
Helix 34
AD7
B
156 170Right-handed alpha
Helix 35
AD8
B
184 202Right-handed alpha
Helix 36
AD9
B
206 219Right-handed alpha
Helix 37
AE1
B
223 232Right-handed alpha
Helix 38
AE2
B
232 248Right-handed alpha
Helix 39
AE3
B
249 253Right-handed 310
Helix 40
AE4
B
255 264Right-handed alpha
Helix 41
AE5
B
268 272Right-handed 310
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There are 6 sheets in PDB entry 9JHY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
25 30parallel
Strand 3
C
1 6parallel
Strand 4
C
83 86parallel
Strand 5
C
111 114parallel
Strand 6
C
132 136parallel
Strand 7
C
146 151anti-parallel
Strand 8
C
173 178parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
276 278first strand
Strand 2
C
284 286anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
26 30parallel
Strand 3
A
2 6parallel
Strand 4
A
83 86parallel
Strand 5
A
111 114parallel
Strand 6
A
132 136parallel
Strand 7
A
146 151anti-parallel
Strand 8
A
173 178parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
284 286anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
26 30parallel
Strand 3
B
2 6parallel
Strand 4
B
83 86parallel
Strand 5
B
111 114parallel
Strand 6
B
132 136parallel
Strand 7
B
146 151anti-parallel
Strand 8
B
173 178parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
284 286anti-parallel
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