Analysis of interatomic Contacts of Structural Units in PDB entry:
9JI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JI0 entry

There are 6 chains in PDB entry 9JI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 289
B
 MET 1GLN 289
C
 MET 1GLN 289
D
 MET 1GLN 289
E
 MET 1GLN 289
F
 MET 1GLN 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 9JI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
33 54Right-handed alpha
Helix 3
AA3
A
58 67Right-handed alpha
Helix 4
AA4
A
91 106Right-handed alpha
Helix 5
AA5
A
120 125Right-handed alpha
Helix 6
AA6
A
156 169Right-handed alpha
Helix 7
AA7
A
184 202Right-handed alpha
Helix 8
AA8
A
206 218Right-handed alpha
Helix 9
AA9
A
223 232Right-handed alpha
Helix 10
AB1
A
232 248Right-handed alpha
Helix 11
AB2
A
249 253Right-handed 310
Helix 12
AB3
A
255 264Right-handed alpha
Helix 13
AB4
A
268 272Right-handed 310
Helix 14
AB5
B
9 21Right-handed alpha
Helix 15
AB6
B
33 53Right-handed alpha
Helix 16
AB7
B
58 67Right-handed alpha
Helix 17
AB8
B
91 106Right-handed alpha
Helix 18
AB9
B
120 125Right-handed alpha
Helix 19
AC1
B
156 170Right-handed alpha
Helix 20
AC2
B
184 202Right-handed alpha
Helix 21
AC3
B
206 218Right-handed alpha
Helix 22
AC4
B
223 232Right-handed alpha
Helix 23
AC5
B
232 248Right-handed alpha
Helix 24
AC6
B
249 253Right-handed 310
Helix 25
AC7
B
255 263Right-handed alpha
Helix 26
AC8
B
268 272Right-handed 310
Helix 27
AC9
C
9 21Right-handed alpha
Helix 28
AD1
C
33 54Right-handed alpha
Helix 29
AD2
C
58 68Right-handed alpha
Helix 30
AD3
C
91 106Right-handed alpha
Helix 31
AD4
C
120 125Right-handed alpha
Helix 32
AD5
C
156 170Right-handed alpha
Helix 33
AD6
C
184 202Right-handed alpha
Helix 34
AD7
C
206 218Right-handed alpha
Helix 35
AD8
C
223 232Right-handed alpha
Helix 36
AD9
C
232 248Right-handed alpha
Helix 37
AE1
C
249 253Right-handed 310
Helix 38
AE2
C
255 264Right-handed alpha
Helix 39
AE3
C
268 272Right-handed 310
Helix 40
AE4
D
9 21Right-handed alpha
Helix 41
AE5
D
33 54Right-handed alpha
Helix 42
AE6
D
58 68Right-handed alpha
Helix 43
AE7
D
91 106Right-handed alpha
Helix 44
AE8
D
120 125Right-handed alpha
Helix 45
AE9
D
156 170Right-handed alpha
Helix 46
AF1
D
184 202Right-handed alpha
Helix 47
AF2
D
206 218Right-handed alpha
Helix 48
AF3
D
223 232Right-handed alpha
Helix 49
AF4
D
232 248Right-handed alpha
Helix 50
AF5
D
249 253Right-handed 310
Helix 51
AF6
D
255 264Right-handed alpha
Helix 52
AF7
E
9 21Right-handed alpha
Helix 53
AF8
E
33 53Right-handed alpha
Helix 54
AF9
E
58 68Right-handed alpha
Helix 55
AG1
E
91 106Right-handed alpha
Helix 56
AG2
E
120 125Right-handed alpha
Helix 57
AG3
E
156 170Right-handed alpha
Helix 58
AG4
E
184 202Right-handed alpha
Helix 59
AG5
E
206 218Right-handed alpha
Helix 60
AG6
E
223 232Right-handed alpha
Helix 61
AG7
E
232 248Right-handed alpha
Helix 62
AG8
E
249 253Right-handed 310
Helix 63
AG9
E
255 264Right-handed alpha
Helix 64
AH1
F
9 21Right-handed alpha
Helix 65
AH2
F
33 52Right-handed alpha
Helix 66
AH3
F
58 68Right-handed alpha
Helix 67
AH4
F
91 106Right-handed alpha
Helix 68
AH5
F
120 125Right-handed alpha
Helix 69
AH6
F
156 169Right-handed alpha
Helix 70
AH7
F
184 202Right-handed alpha
Helix 71
AH8
F
206 217Right-handed alpha
Helix 72
AH9
F
223 232Right-handed alpha
Helix 73
AI1
F
232 248Right-handed alpha
Helix 74
AI2
F
249 253Right-handed 310
Helix 75
AI3
F
255 264Right-handed alpha
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There are 12 sheets in PDB entry 9JI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
26 30parallel
Strand 3
A
2 6parallel
Strand 4
A
83 86parallel
Strand 5
A
111 114parallel
Strand 6
A
133 136parallel
Strand 7
A
146 151anti-parallel
Strand 8
A
173 178parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
285 286anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
26 30parallel
Strand 3
B
2 6parallel
Strand 4
B
83 86parallel
Strand 5
B
111 114parallel
Strand 6
B
133 136parallel
Strand 7
B
146 151anti-parallel
Strand 8
B
173 178parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
284 286anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 70first strand
Strand 2
C
26 30parallel
Strand 3
C
2 6parallel
Strand 4
C
83 86parallel
Strand 5
C
111 114parallel
Strand 6
C
132 136parallel
Strand 7
C
146 151anti-parallel
Strand 8
C
173 178parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
276 278first strand
Strand 2
C
284 286anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 70first strand
Strand 2
D
26 30parallel
Strand 3
D
2 6parallel
Strand 4
D
83 86parallel
Strand 5
D
111 114parallel
Strand 6
D
132 136parallel
Strand 7
D
146 151anti-parallel
Strand 8
D
173 178parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
276 278first strand
Strand 2
D
284 286anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
69 71first strand
Strand 2
E
26 30parallel
Strand 3
E
2 6parallel
Strand 4
E
83 86parallel
Strand 5
E
111 114parallel
Strand 6
E
133 136parallel
Strand 7
E
146 151anti-parallel
Strand 8
E
173 178parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
276 278first strand
Strand 2
E
284 286anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
69 70first strand
Strand 2
F
26 30parallel
Strand 3
F
2 6parallel
Strand 4
F
83 86parallel
Strand 5
F
111 114parallel
Strand 6
F
132 136parallel
Strand 7
F
146 151anti-parallel
Strand 8
F
173 178parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
276 277first strand
Strand 2
F
285 286anti-parallel
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