Analysis of interatomic Contacts of Structural Units in PDB entry:
9JI4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JI4 entry

There are 12 chains in PDB entry 9JI4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ASN 226
B	MET 1	SER 237
C	ASN 30	SER 1140
D	MET 1	ALA 1282
E	GLY 27	GLY 109
H	T 1	A 77
G	T 1	A 77
F	GLU 206	LEU 527
J	VAL 149	ARG 247
K	VAL 149	ARG 247
M	VAL 149	ARG 247
I	VAL 149	ARG 247

There are125 helices in PDB entry 9JI4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	45	Right-handed alpha
Helix 2	AA2	A	72	82	Right-handed alpha
Helix 3	AA3	A	203	224	Right-handed alpha
Helix 4	AA4	B	29	46	Right-handed alpha
Helix 5	AA5	B	72	82	Right-handed alpha
Helix 6	AA6	B	108	110	Right-handed 310
Helix 7	AA7	B	203	224	Right-handed alpha
Helix 8	AA8	C	54	66	Right-handed alpha
Helix 9	AA9	C	67	75	Right-handed alpha
Helix 10	AB1	C	84	94	Right-handed alpha
Helix 11	AB2	C	118	125	Right-handed alpha
Helix 12	AB3	C	233	241	Right-handed alpha
Helix 13	AB4	C	244	252	Right-handed alpha
Helix 14	AB5	C	255	264	Right-handed alpha
Helix 15	AB6	C	269	282	Right-handed alpha
Helix 16	AB7	C	290	301	Right-handed alpha
Helix 17	AB8	C	309	321	Right-handed alpha
Helix 18	AB9	C	334	351	Right-handed alpha
Helix 19	AC1	C	380	407	Right-handed alpha
Helix 20	AC2	C	413	418	Right-handed alpha
Helix 21	AC3	C	420	432	Right-handed alpha
Helix 22	AC4	C	444	452	Right-handed alpha
Helix 23	AC5	C	476	480	Right-handed 310
Helix 24	AC6	C	534	539	Right-handed alpha
Helix 25	AC7	C	589	593	Right-handed 310
Helix 26	AC8	C	596	600	Right-handed 310
Helix 27	AC9	C	601	613	Right-handed alpha
Helix 28	AD1	C	629	638	Right-handed alpha
Helix 29	AD2	C	739	744	Right-handed alpha
Helix 30	AD3	C	815	826	Right-handed alpha
Helix 31	AD4	C	900	904	Right-handed 310
Helix 32	AD5	C	922	927	Right-handed 310
Helix 33	AD6	C	928	943	Right-handed alpha
Helix 34	AD7	C	953	959	Right-handed alpha
Helix 35	AD8	C	981	991	Right-handed alpha
Helix 36	AD9	C	1037	1041	Right-handed 310
Helix 37	AE1	C	1069	1080	Right-handed alpha
Helix 38	AE2	C	1081	1091	Right-handed alpha
Helix 39	AE3	C	1095	1109	Right-handed alpha
Helix 40	AE4	C	1118	1131	Right-handed alpha
Helix 41	AE5	D	16	24	Right-handed alpha
Helix 42	AE6	D	48	53	Right-handed alpha
Helix 43	AE7	D	86	91	Right-handed alpha
Helix 44	AE8	D	103	108	Right-handed alpha
Helix 45	AE9	D	112	118	Right-handed alpha
Helix 46	AF1	D	121	130	Right-handed alpha
Helix 47	AF2	D	140	185	Right-handed alpha
Helix 48	AF3	D	190	228	Right-handed alpha
Helix 49	AF4	D	237	246	Right-handed alpha
Helix 50	AF5	D	257	267	Right-handed alpha
Helix 51	AF6	D	269	284	Right-handed alpha
Helix 52	AF7	D	286	305	Right-handed alpha
Helix 53	AF8	D	308	311	Right-handed 310
Helix 54	AF9	D	321	325	Right-handed 310
Helix 55	AG1	D	339	361	Right-handed alpha
Helix 56	AG2	D	363	383	Right-handed alpha
Helix 57	AG3	D	402	407	Right-handed 310
Helix 58	AG4	D	411	417	Right-handed alpha
Helix 59	AG5	D	445	452	Right-handed alpha
Helix 60	AG6	D	452	463	Right-handed alpha
Helix 61	AG7	D	468	478	Right-handed alpha
Helix 62	AG8	D	481	492	Right-handed alpha
Helix 63	AG9	D	505	507	Right-handed 310
Helix 64	AH1	D	528	533	Right-handed alpha
Helix 65	AH2	D	548	558	Right-handed alpha
Helix 66	AH3	D	560	564	Right-handed 310
Helix 67	AH4	D	578	590	Right-handed alpha
Helix 68	AH5	D	614	624	Right-handed alpha
Helix 69	AH6	D	643	651	Right-handed alpha
Helix 70	AH7	D	667	677	Right-handed alpha
Helix 71	AH8	D	689	704	Right-handed alpha
Helix 72	AH9	D	705	727	Right-handed alpha
Helix 73	AI1	D	741	763	Right-handed alpha
Helix 74	AI2	D	766	793	Right-handed alpha
Helix 75	AI3	D	797	805	Right-handed alpha
Helix 76	AI4	D	810	818	Right-handed alpha
Helix 77	AI5	D	845	881	Right-handed alpha
Helix 78	AI6	D	945	956	Right-handed alpha
Helix 79	AI7	D	964	968	Right-handed 310
Helix 80	AI8	D	975	980	Right-handed alpha
Helix 81	AI9	D	994	1005	Right-handed alpha
Helix 82	AJ1	D	1006	1010	Right-handed 310
Helix 83	AJ2	D	1027	1036	Right-handed alpha
Helix 84	AJ3	D	1117	1144	Right-handed alpha
Helix 85	AJ4	D	1150	1162	Right-handed alpha
Helix 86	AJ5	D	1183	1194	Right-handed alpha
Helix 87	AJ6	D	1209	1216	Right-handed alpha
Helix 88	AJ7	D	1219	1225	Right-handed alpha
Helix 89	AJ8	D	1228	1240	Right-handed alpha
Helix 90	AJ9	D	1247	1255	Right-handed alpha
Helix 91	AK1	D	1260	1263	Right-handed 310
Helix 92	AK2	D	1264	1269	Right-handed alpha
Helix 93	AK3	D	1275	1281	Right-handed alpha
Helix 94	AK4	E	33	37	Right-handed 310
Helix 95	AK5	E	39	47	Right-handed alpha
Helix 96	AK6	E	49	70	Right-handed alpha
Helix 97	AK7	E	90	101	Right-handed alpha
Helix 98	AK8	F	212	221	Right-handed alpha
Helix 99	AK9	F	226	236	Right-handed alpha
Helix 100	AL1	F	242	268	Right-handed alpha
Helix 101	AL2	F	274	277	Right-handed 310
Helix 102	AL3	F	278	308	Right-handed alpha
Helix 103	AL4	F	316	335	Right-handed alpha
Helix 104	AL5	F	342	363	Right-handed alpha
Helix 105	AL6	F	369	391	Right-handed alpha
Helix 106	AL7	F	395	404	Right-handed alpha
Helix 107	AL8	F	406	418	Right-handed alpha
Helix 108	AL9	F	434	439	Right-handed 310
Helix 109	AM1	F	448	467	Right-handed alpha
Helix 110	AM2	F	468	480	Right-handed alpha
Helix 111	AM3	F	488	497	Right-handed alpha
Helix 112	AM4	F	499	515	Right-handed alpha
Helix 113	AM5	F	516	525	Right-handed alpha
Helix 114	AM6	J	175	188	Right-handed alpha
Helix 115	AM7	J	194	202	Right-handed alpha
Helix 116	AM8	J	211	225	Right-handed alpha
Helix 117	AM9	K	175	188	Right-handed alpha
Helix 118	AN1	K	194	202	Right-handed alpha
Helix 119	AN2	K	211	225	Right-handed alpha
Helix 120	AN3	M	175	188	Right-handed alpha
Helix 121	AN4	M	194	202	Right-handed alpha
Helix 122	AN5	M	211	225	Right-handed alpha
Helix 123	AN6	I	175	188	Right-handed alpha
Helix 124	AN7	I	194	202	Right-handed alpha
Helix 125	AN8	I	211	225	Right-handed alpha

There are 49 sheets in PDB entry 9JI4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	192	198	anti-parallel
Strand 4	A	171	178	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	147	anti-parallel
Strand 3	A	47	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	147	anti-parallel
Strand 3	A	166	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	124	127	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	15	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	192	198	anti-parallel
Strand 4	B	171	178	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	147	148	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	151	158	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	454	456	parallel
Strand 3	C	498	499	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	191	first strand
Strand 2	C	198	204	anti-parallel
Strand 3	C	212	216	anti-parallel
Strand 4	C	222	223	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	523	531	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	578	580	anti-parallel
Strand 4	C	541	542	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	559	562	first strand
Strand 2	C	568	571	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	700	704	anti-parallel
Strand 3	C	687	688	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	648	653	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	667	671	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	885	886	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	717	722	anti-parallel
Strand 4	C	915	916	parallel
Strand 5	C	735	738	anti-parallel
Strand 6	C	895	899	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	885	886	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	1007	1008	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	766	first strand
Strand 2	C	748	762	anti-parallel
Strand 3	C	865	878	anti-parallel
Strand 4	C	846	854	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	808	anti-parallel
Strand 3	C	832	834	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	521	524	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1067	1068	first strand
Strand 2	D	420	421	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1133	1138	first strand
Strand 2	D	9	14	anti-parallel
Strand 3	D	1242	1243	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	335	337	anti-parallel
Strand 3	F	421	422	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	633	637	parallel
Strand 3	D	662	666	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	899	first strand
Strand 2	D	960	962	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	930	first strand
Strand 2	D	936	938	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1051	1052	first strand
Strand 2	D	1104	1105	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1061	1066	first strand
Strand 2	D	1075	1081	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1167	anti-parallel
Strand 3	D	1203	1205	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1274	first strand
Strand 2	E	104	107	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	151	153	first strand
Strand 2	J	156	159	anti-parallel
Strand 3	J	164	167	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	233	236	first strand
Strand 2	J	240	243	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	151	153	first strand
Strand 2	K	156	158	anti-parallel
Strand 3	K	165	167	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	233	236	first strand
Strand 2	K	240	243	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	151	153	first strand
Strand 2	M	156	158	anti-parallel
Strand 3	M	165	167	anti-parallel
Strand 4	M	170	172	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	192	193	first strand
Strand 2	M	240	243	anti-parallel
Strand 3	M	233	236	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	151	153	first strand
Strand 2	I	156	158	anti-parallel
Strand 3	I	165	167	anti-parallel
Strand 4	I	170	172	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	192	193	first strand
Strand 2	I	240	243	anti-parallel
Strand 3	I	233	236	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JI4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JI4