Analysis of interatomic Contacts of Structural Units in PDB entry:
9JIC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JIC entry

There are 5 chains in PDB entry 9JIC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 18	SER 300
C	THR 4	CYS 351
B	GLU 10	ASN 340
G	ARG 27	GLU 63
S	ASP 1	LEU 235

There are 23 helices in PDB entry 9JIC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	55	Right-handed alpha
Helix 2	AA2	A	60	78	Right-handed alpha
Helix 3	AA3	A	79	89	Right-handed alpha
Helix 4	AA4	A	97	130	Right-handed alpha
Helix 5	AA5	A	140	164	Right-handed alpha
Helix 6	AA6	A	172	178	Right-handed alpha
Helix 7	AA7	A	188	217	Right-handed alpha
Helix 8	AA8	A	224	261	Right-handed alpha
Helix 9	AA9	A	265	298	Right-handed alpha
Helix 10	AB1	C	6	31	Right-handed alpha
Helix 11	AB2	C	45	53	Right-handed alpha
Helix 12	AB3	C	207	212	Right-handed alpha
Helix 13	AB4	C	213	216	Right-handed 310
Helix 14	AB5	C	242	255	Right-handed alpha
Helix 15	AB6	C	270	281	Right-handed alpha
Helix 16	AB7	C	295	310	Right-handed alpha
Helix 17	AB8	C	330	351	Right-handed alpha
Helix 18	AB9	B	11	25	Right-handed alpha
Helix 19	AC1	B	29	34	Right-handed alpha
Helix 20	AC2	G	29	45	Right-handed alpha
Helix 21	AC3	G	55	59	Right-handed 310
Helix 22	AC4	S	28	32	Right-handed 310
Helix 23	AC5	S	62	65	Right-handed 310

There are 13 sheets in PDB entry 9JIC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	190	first strand
Strand 2	C	195	200	anti-parallel
Strand 3	C	36	39	parallel
Strand 4	C	220	223	parallel
Strand 5	C	263	268	parallel
Strand 6	C	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	320	first strand
Strand 2	B	327	331	anti-parallel
Strand 3	B	335	339	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	18	25	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	58	60	first strand
Strand 2	S	45	51	anti-parallel
Strand 3	S	33	39	anti-parallel
Strand 4	S	92	99	anti-parallel
Strand 5	S	110	111	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	58	60	first strand
Strand 2	S	45	51	anti-parallel
Strand 3	S	33	39	anti-parallel
Strand 4	S	92	99	anti-parallel
Strand 5	S	115	117	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	148	first strand
Strand 2	S	199	203	anti-parallel
Strand 3	S	192	196	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	182	183	first strand
Strand 2	S	174	178	anti-parallel
Strand 3	S	162	167	anti-parallel
Strand 4	S	214	219	anti-parallel
Strand 5	S	231	232	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JIC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JIC