Analysis of interatomic Contacts of Structural Units in PDB entry:
9JIM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JIM entry

There are 6 chains in PDB entry 9JIM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 447	VAL 597
L	VAL 3	LEU 110
H	GLN 1	SER 130
B	PRO 447	VAL 597
D	VAL 3	LEU 110
C	GLN 1	SER 130

There are 9 helices in PDB entry 9JIM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	473	477	Right-handed 310
Helix 2	AA2	A	501	503	Right-handed 310
Helix 3	AA3	L	80	84	Right-handed 310
Helix 4	AA4	H	28	32	Right-handed 310
Helix 5	AA5	H	87	90	Right-handed 310
Helix 6	AA6	B	473	477	Right-handed 310
Helix 7	AA7	B	501	503	Right-handed 310
Helix 8	AA8	D	80	84	Right-handed 310
Helix 9	AA9	C	28	32	Right-handed 310

There are 20 sheets in PDB entry 9JIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	509	510	parallel
Strand 3	A	513	514	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	499	first strand
Strand 2	A	488	491	anti-parallel
Strand 3	A	459	470	anti-parallel
Strand 4	A	481	484	anti-parallel
Strand 5	A	568	573	anti-parallel
Strand 6	A	557	562	anti-parallel
Strand 7	A	525	538	anti-parallel
Strand 8	A	516	518	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	499	first strand
Strand 2	A	488	491	anti-parallel
Strand 3	A	459	470	anti-parallel
Strand 4	A	584	592	anti-parallel
Strand 5	A	525	538	anti-parallel
Strand 6	A	516	518	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	35	39	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	100	101	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	21	first strand
Strand 2	L	72	76	anti-parallel
Strand 3	L	63	67	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	69	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	72	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	125	129	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	125	129	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	116	121	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	509	510	parallel
Strand 3	B	513	514	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	499	first strand
Strand 2	B	488	491	anti-parallel
Strand 3	B	459	470	anti-parallel
Strand 4	B	481	484	anti-parallel
Strand 5	B	568	573	anti-parallel
Strand 6	B	557	562	anti-parallel
Strand 7	B	525	529	anti-parallel
Strand 8	B	516	518	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	499	first strand
Strand 2	B	488	491	anti-parallel
Strand 3	B	459	470	anti-parallel
Strand 4	B	584	591	anti-parallel
Strand 5	B	535	538	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	49	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	100	101	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	D	72	76	anti-parallel
Strand 3	D	63	67	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	69	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	72	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	125	129	parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	125	129	parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	116	121	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JIM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JIM