Analysis of interatomic Contacts of Structural Units in PDB entry:
9JIN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JIN entry

There are 6 chains in PDB entry 9JIN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 447	VAL 597
B	PRO 447	VAL 597
C	GLN 1	VAL 128
D	MET 4	ILE 106
H	GLN 1	VAL 128
L	MET 4	ILE 106

There are 10 helices in PDB entry 9JIN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	501	503	Right-handed 310
Helix 2	AA2	A	504	507	Right-handed 310
Helix 3	AA3	B	501	503	Right-handed 310
Helix 4	AA4	B	504	507	Right-handed 310
Helix 5	AA5	C	28	32	Right-handed 310
Helix 6	AA6	C	106	111	Right-handed 310
Helix 7	AA7	D	79	83	Right-handed 310
Helix 8	AA8	H	28	32	Right-handed 310
Helix 9	AA9	H	106	111	Right-handed 310
Helix 10	AB1	L	79	83	Right-handed 310

There are 17 sheets in PDB entry 9JIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	509	510	parallel
Strand 3	A	513	514	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	499	first strand
Strand 2	A	488	491	anti-parallel
Strand 3	A	459	473	anti-parallel
Strand 4	A	479	484	anti-parallel
Strand 5	A	568	573	anti-parallel
Strand 6	A	557	562	anti-parallel
Strand 7	A	523	529	anti-parallel
Strand 8	A	516	520	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	499	first strand
Strand 2	A	488	491	anti-parallel
Strand 3	A	459	473	anti-parallel
Strand 4	A	584	591	anti-parallel
Strand 5	A	535	538	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	509	510	parallel
Strand 3	B	513	514	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	499	first strand
Strand 2	B	488	491	anti-parallel
Strand 3	B	459	473	anti-parallel
Strand 4	B	479	484	anti-parallel
Strand 5	B	568	573	anti-parallel
Strand 6	B	557	562	anti-parallel
Strand 7	B	523	529	anti-parallel
Strand 8	B	516	520	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	499	first strand
Strand 2	B	488	491	anti-parallel
Strand 3	B	459	473	anti-parallel
Strand 4	B	584	591	anti-parallel
Strand 5	B	535	538	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	124	127	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	124	127	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	117	120	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	102	105	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	48	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	70	75	anti-parallel
Strand 3	D	62	67	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	124	127	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	124	127	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	117	120	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JIN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JIN