Analysis of interatomic Contacts of Structural Units in PDB entry:
9JIX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JIX entry

There are 2 chains in PDB entry 9JIX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -1SER 153
C
 GLY 0GLN 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9JIX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
39 51Right-handed alpha
Helix 3
AA3
A
65 67Right-handed 310
Helix 4
AA4
A
68 80Right-handed alpha
Helix 5
AA5
A
91 102Right-handed alpha
Helix 6
AA6
A
113 123Right-handed alpha
Helix 7
AA7
A
133 149Right-handed alpha
Helix 8
AA8
C
13 28Right-handed alpha
Helix 9
AA9
C
39 51Right-handed alpha
Helix 10
AB1
C
65 67Right-handed 310
Helix 11
AB2
C
68 80Right-handed alpha
Helix 12
AB3
C
91 102Right-handed alpha
Helix 13
AB4
C
113 124Right-handed alpha
Helix 14
AB5
C
133 148Right-handed alpha
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There are 2 sheets in PDB entry 9JIX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
58 63parallel
Strand 3
A
1 7parallel
Strand 4
A
83 89parallel
Strand 5
A
105 108parallel
Strand 6
A
126 127parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 36first strand
Strand 2
C
58 63parallel
Strand 3
C
2 7parallel
Strand 4
C
84 89parallel
Strand 5
C
105 108parallel
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