Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JJ1 entry

There are 2 chains in PDB entry 9JJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 54ALA 388
B
 HIS 54ALA 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9JJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 98Right-handed alpha
Helix 2
AA2
A
100 126Right-handed alpha
Helix 3
AA3
A
139 169Right-handed alpha
Helix 4
AA4
A
176 201Right-handed alpha
Helix 5
AA5
A
231 259Right-handed alpha
Helix 6
AA6
A
264 293Right-handed alpha
Helix 7
AA7
A
301 311Right-handed alpha
Helix 8
AA8
A
344 361Right-handed alpha
Helix 9
AA9
A
375 383Right-handed 310
Helix 10
AB1
B
66 98Right-handed alpha
Helix 11
AB2
B
100 126Right-handed alpha
Helix 12
AB3
B
139 169Right-handed alpha
Helix 13
AB4
B
176 201Right-handed alpha
Helix 14
AB5
B
231 259Right-handed alpha
Helix 15
AB6
B
264 293Right-handed alpha
Helix 16
AB7
B
301 311Right-handed alpha
Helix 17
AB8
B
344 361Right-handed alpha
Helix 18
AB9
B
375 379Right-handed 310
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There are 2 sheets in PDB entry 9JJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 325first strand
Strand 2
A
331 339anti-parallel
Strand 3
A
364 371parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 325first strand
Strand 2
B
331 339anti-parallel
Strand 3
B
364 371parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il