Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JJ2 entry

There are 2 chains in PDB entry 9JJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 78TYR 372
B
 ALA 78TYR 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 9JJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 98Right-handed alpha
Helix 2
AA2
A
100 127Right-handed alpha
Helix 3
AA3
A
140 170Right-handed alpha
Helix 4
AA4
A
176 199Right-handed alpha
Helix 5
AA5
A
238 259Right-handed alpha
Helix 6
AA6
A
264 294Right-handed alpha
Helix 7
AA7
A
301 311Right-handed alpha
Helix 8
AA8
A
344 361Right-handed alpha
Helix 9
AA9
B
81 98Right-handed alpha
Helix 10
AB1
B
100 127Right-handed alpha
Helix 11
AB2
B
140 170Right-handed alpha
Helix 12
AB3
B
176 199Right-handed alpha
Helix 13
AB4
B
238 259Right-handed alpha
Helix 14
AB5
B
264 294Right-handed alpha
Helix 15
AB6
B
301 311Right-handed alpha
Helix 16
AB7
B
344 361Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9JJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
338 339anti-parallel
Strand 3
A
370 371parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 325first strand
Strand 2
A
331 335anti-parallel
Strand 3
A
364 367parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 317first strand
Strand 2
B
338 339anti-parallel
Strand 3
B
370 371parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 325first strand
Strand 2
B
331 335anti-parallel
Strand 3
B
364 367parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il