Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JJ3 entry

There are 2 chains in PDB entry 9JJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 CYS 98ARG 414
A
 CYS 98ARG 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9JJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
101 135Right-handed alpha
Helix 2
AA2
B
137 165Right-handed alpha
Helix 3
AA3
B
177 206Right-handed alpha
Helix 4
AA4
B
215 236Right-handed alpha
Helix 5
AA5
B
268 297Right-handed alpha
Helix 6
AA6
B
303 332Right-handed alpha
Helix 7
AA7
B
340 350Right-handed alpha
Helix 8
AA8
B
386 402Right-handed alpha
Helix 9
AA9
A
101 135Right-handed alpha
Helix 10
AB1
A
137 142Right-handed alpha
Helix 11
AB2
A
142 165Right-handed alpha
Helix 12
AB3
A
177 206Right-handed alpha
Helix 13
AB4
A
215 236Right-handed alpha
Helix 14
AB5
A
268 297Right-handed alpha
Helix 15
AB6
A
303 332Right-handed alpha
Helix 16
AB7
A
340 350Right-handed alpha
Helix 17
AB8
A
386 402Right-handed alpha
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There are 3 sheets in PDB entry 9JJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 366first strand
Strand 2
B
369 377anti-parallel
Strand 3
B
405 408parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
376 377anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 366first strand
Strand 2
A
369 374anti-parallel
Strand 3
A
405 408parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il