Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JJ4 entry

There are 2 chains in PDB entry 9JJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -2VAL 351
B
 LEU -2VAL 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9JJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed alpha
Helix 2
AA2
A
50 56Right-handed alpha
Helix 3
AA3
A
122 126Right-handed 310
Helix 4
AA4
A
131 137Right-handed 310
Helix 5
AA5
A
140 153Right-handed alpha
Helix 6
AA6
A
169 182Right-handed alpha
Helix 7
AA7
A
192 203Right-handed alpha
Helix 8
AA8
A
215 227Right-handed alpha
Helix 9
AA9
A
239 249Right-handed alpha
Helix 10
AB1
A
261 266Right-handed alpha
Helix 11
AB2
A
275 279Right-handed 310
Helix 12
AB3
A
290 295Right-handed 310
Helix 13
AB4
A
296 313Right-handed alpha
Helix 14
AB5
A
328 335Right-handed alpha
Helix 15
AB6
B
17 21Right-handed alpha
Helix 16
AB7
B
50 57Right-handed alpha
Helix 17
AB8
B
122 126Right-handed 310
Helix 18
AB9
B
131 137Right-handed 310
Helix 19
AC1
B
140 153Right-handed alpha
Helix 20
AC2
B
169 182Right-handed alpha
Helix 21
AC3
B
193 202Right-handed alpha
Helix 22
AC4
B
215 227Right-handed alpha
Helix 23
AC5
B
239 247Right-handed alpha
Helix 24
AC6
B
261 266Right-handed alpha
Helix 25
AC7
B
275 279Right-handed 310
Helix 26
AC8
B
290 295Right-handed 310
Helix 27
AC9
B
296 313Right-handed alpha
Helix 28
AD1
B
328 339Right-handed alpha
Helix 29
AD2
B
340 343Right-handed 310
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There are 10 sheets in PDB entry 9JJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
0 8first strand
Strand 2
A
22 30anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
38 46anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
86 89anti-parallel
Strand 5
A
119 121anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
38 46anti-parallel
Strand 3
A
346 350anti-parallel
Strand 4
A
320 324parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
113 115anti-parallel
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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 209first strand
Strand 2
A
185 190parallel
Strand 3
A
161 164parallel
Strand 4
A
231 236parallel
Strand 5
A
250 258parallel
Strand 6
A
285 288parallel
Strand 7
B
285 288anti-parallel
Strand 8
B
250 258parallel
Strand 9
B
231 236parallel
Strand 10
B
161 164parallel
Strand 11
B
185 190parallel
Strand 12
B
206 209parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
B
271 273anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
0 8first strand
Strand 2
B
22 30anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
38 46anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
86 89anti-parallel
Strand 5
B
119 121anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
38 46anti-parallel
Strand 3
B
346 350anti-parallel
Strand 4
B
320 324parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
114 115anti-parallel
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