Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JJ6 entry

There are 2 chains in PDB entry 9JJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 377PRO 566
A
 SER 19THR 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9JJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
378 383Right-handed alpha
Helix 2
AA2
B
388 392Right-handed 310
Helix 3
AA3
B
403 410Right-handed alpha
Helix 4
AA4
B
442 450Right-handed 310
Helix 5
AA5
A
20 53Right-handed alpha
Helix 6
AA6
A
55 81Right-handed alpha
Helix 7
AA7
A
90 101Right-handed alpha
Helix 8
AA8
A
103 108Right-handed 310
Helix 9
AA9
A
109 129Right-handed alpha
Helix 10
AB1
A
146 155Right-handed alpha
Helix 11
AB2
A
157 172Right-handed alpha
Helix 12
AB3
A
173 175Right-handed 310
Helix 13
AB4
A
176 193Right-handed alpha
Helix 14
AB5
A
198 205Right-handed alpha
Helix 15
AB6
A
206 208Right-handed 310
Helix 16
AB7
A
220 250Right-handed alpha
Helix 17
AB8
A
265 267Right-handed 310
Helix 18
AB9
A
275 277Right-handed 310
Helix 19
AC1
A
278 283Right-handed alpha
Helix 20
AC2
A
293 300Right-handed alpha
Helix 21
AC3
A
303 319Right-handed alpha
Helix 22
AC4
A
324 331Right-handed alpha
Helix 23
AC5
A
365 386Right-handed alpha
Helix 24
AC6
A
389 393Right-handed 310
Helix 25
AC7
A
399 413Right-handed alpha
Helix 26
AC8
A
414 421Right-handed alpha
Helix 27
AC9
A
431 446Right-handed alpha
Helix 28
AD1
A
448 465Right-handed alpha
Helix 29
AD2
A
469 471Right-handed 310
Helix 30
AD3
A
472 484Right-handed alpha
Helix 31
AD4
A
499 502Right-handed 310
Helix 32
AD5
A
503 508Right-handed alpha
Helix 33
AD6
A
513 533Right-handed alpha
Helix 34
AD7
A
547 559Right-handed alpha
Helix 35
AD8
A
565 575Right-handed alpha
Helix 36
AD9
A
581 588Right-handed alpha
Helix 37
AE1
A
588 599Right-handed alpha
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There are 5 sheets in PDB entry 9JJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
393 397first strand
Strand 2
B
433 440anti-parallel
Strand 3
B
549 556anti-parallel
Strand 4
B
470 475anti-parallel
Strand 5
B
415 419anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 505first strand
Strand 2
B
489 499anti-parallel
Strand 3
B
533 541anti-parallel
Strand 4
B
523 526anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
142 143anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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