Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JJ9 entry

There are 3 chains in PDB entry 9JJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 27GLU 926
C
 GLU 949VAL 1016
A
 GLU 27GLU 926
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9JJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
43 53Right-handed alpha
Helix 2
AA2
B
103 110Right-handed alpha
Helix 3
AA3
B
111 128Right-handed alpha
Helix 4
AA4
B
131 136Right-handed 310
Helix 5
AA5
B
149 156Right-handed alpha
Helix 6
AA6
B
166 170Right-handed alpha
Helix 7
AA7
B
174 185Right-handed alpha
Helix 8
AA8
B
198 214Right-handed alpha
Helix 9
AA9
B
229 240Right-handed alpha
Helix 10
AB1
B
272 279Right-handed alpha
Helix 11
AB2
B
304 319Right-handed alpha
Helix 12
AB3
B
338 351Right-handed alpha
Helix 13
AB4
B
364 369Right-handed alpha
Helix 14
AB5
B
374 390Right-handed alpha
Helix 15
AB6
B
406 411Right-handed alpha
Helix 16
AB7
B
484 501Right-handed alpha
Helix 17
AB8
B
502 507Right-handed 310
Helix 18
AB9
B
508 519Right-handed alpha
Helix 19
AC1
B
533 545Right-handed alpha
Helix 20
AC2
C
954 960Right-handed 310
Helix 21
AC3
C
972 977Right-handed alpha
Helix 22
AC4
C
979 989Right-handed alpha
Helix 23
AC5
C
1008 1015Right-handed alpha
Helix 24
AC6
A
43 53Right-handed alpha
Helix 25
AC7
A
103 110Right-handed alpha
Helix 26
AC8
A
111 128Right-handed alpha
Helix 27
AC9
A
131 136Right-handed 310
Helix 28
AD1
A
149 158Right-handed alpha
Helix 29
AD2
A
165 171Right-handed alpha
Helix 30
AD3
A
174 185Right-handed alpha
Helix 31
AD4
A
198 214Right-handed alpha
Helix 32
AD5
A
229 240Right-handed alpha
Helix 33
AD6
A
272 279Right-handed alpha
Helix 34
AD7
A
304 319Right-handed alpha
Helix 35
AD8
A
338 351Right-handed alpha
Helix 36
AD9
A
374 390Right-handed alpha
Helix 37
AE1
A
406 411Right-handed alpha
Helix 38
AE2
A
484 501Right-handed alpha
Helix 39
AE3
A
503 507Right-handed 310
Helix 40
AE4
A
508 519Right-handed alpha
Helix 41
AE5
A
533 545Right-handed alpha
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There are 8 sheets in PDB entry 9JJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 414first strand
Strand 2
B
359 362parallel
Strand 3
B
328 330parallel
Strand 4
B
432 438parallel
Strand 5
B
443 450anti-parallel
Strand 6
B
284 293anti-parallel
Strand 7
B
29 37anti-parallel
Strand 8
B
263 271anti-parallel
Strand 9
B
218 225anti-parallel
Strand 10
B
140 145parallel
Strand 11
B
190 194parallel
Strand 12
A
190 194anti-parallel
Strand 13
A
140 145parallel
Strand 14
A
218 225parallel
Strand 15
A
263 271anti-parallel
Strand 16
A
29 37anti-parallel
Strand 17
A
284 293anti-parallel
Strand 18
A
443 451anti-parallel
Strand 19
A
432 438anti-parallel
Strand 20
A
326 330parallel
Strand 21
A
359 362parallel
Strand 22
A
412 414parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
86 87anti-parallel
Strand 3
B
260 261parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
921 922anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 392first strand
Strand 2
B
419 420anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
478 482first strand
Strand 2
B
525 529anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
921 922anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
419 420anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 482first strand
Strand 2
A
525 529anti-parallel
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