Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JJB entry

There are 4 chains in PDB entry 9JJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 27GLU 926
C
 GLU 949VAL 1016
B
 GLU 27GLU 926
D
 GLU 949VAL 1016
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9JJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 54Right-handed alpha
Helix 2
AA2
A
103 109Right-handed alpha
Helix 3
AA3
A
111 128Right-handed alpha
Helix 4
AA4
A
131 136Right-handed 310
Helix 5
AA5
A
149 157Right-handed alpha
Helix 6
AA6
A
165 171Right-handed alpha
Helix 7
AA7
A
174 185Right-handed alpha
Helix 8
AA8
A
198 213Right-handed alpha
Helix 9
AA9
A
229 240Right-handed alpha
Helix 10
AB1
A
272 279Right-handed alpha
Helix 11
AB2
A
304 320Right-handed alpha
Helix 12
AB3
A
338 351Right-handed alpha
Helix 13
AB4
A
363 367Right-handed 310
Helix 14
AB5
A
371 373Right-handed 310
Helix 15
AB6
A
374 387Right-handed alpha
Helix 16
AB7
A
406 411Right-handed alpha
Helix 17
AB8
A
484 501Right-handed alpha
Helix 18
AB9
A
501 506Right-handed alpha
Helix 19
AC1
A
508 519Right-handed alpha
Helix 20
AC2
A
533 545Right-handed alpha
Helix 21
AC3
C
955 960Right-handed alpha
Helix 22
AC4
C
963 967Right-handed 310
Helix 23
AC5
C
973 977Right-handed 310
Helix 24
AC6
C
979 992Right-handed alpha
Helix 25
AC7
C
1002 1006Right-handed alpha
Helix 26
AC8
C
1008 1014Right-handed alpha
Helix 27
AC9
B
43 54Right-handed alpha
Helix 28
AD1
B
103 109Right-handed alpha
Helix 29
AD2
B
111 128Right-handed alpha
Helix 30
AD3
B
131 136Right-handed 310
Helix 31
AD4
B
149 156Right-handed alpha
Helix 32
AD5
B
165 171Right-handed alpha
Helix 33
AD6
B
174 185Right-handed alpha
Helix 34
AD7
B
198 213Right-handed alpha
Helix 35
AD8
B
229 240Right-handed alpha
Helix 36
AD9
B
272 279Right-handed alpha
Helix 37
AE1
B
304 320Right-handed alpha
Helix 38
AE2
B
338 351Right-handed alpha
Helix 39
AE3
B
363 367Right-handed 310
Helix 40
AE4
B
371 373Right-handed 310
Helix 41
AE5
B
374 387Right-handed alpha
Helix 42
AE6
B
406 411Right-handed alpha
Helix 43
AE7
B
484 501Right-handed alpha
Helix 44
AE8
B
501 506Right-handed alpha
Helix 45
AE9
B
508 519Right-handed alpha
Helix 46
AF1
B
533 545Right-handed alpha
Helix 47
AF2
D
955 960Right-handed alpha
Helix 48
AF3
D
963 967Right-handed 310
Helix 49
AF4
D
973 977Right-handed 310
Helix 50
AF5
D
979 992Right-handed alpha
Helix 51
AF6
D
1002 1006Right-handed alpha
Helix 52
AF7
D
1008 1014Right-handed alpha
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There are 7 sheets in PDB entry 9JJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
359 362parallel
Strand 3
A
328 330parallel
Strand 4
A
432 438parallel
Strand 5
A
443 450anti-parallel
Strand 6
A
284 293anti-parallel
Strand 7
A
29 37anti-parallel
Strand 8
A
263 271anti-parallel
Strand 9
A
218 225anti-parallel
Strand 10
A
140 145parallel
Strand 11
A
190 194parallel
Strand 12
B
190 194anti-parallel
Strand 13
B
140 145parallel
Strand 14
B
218 225parallel
Strand 15
B
263 271anti-parallel
Strand 16
B
29 37anti-parallel
Strand 17
B
284 293anti-parallel
Strand 18
B
443 450anti-parallel
Strand 19
B
432 438anti-parallel
Strand 20
B
328 330parallel
Strand 21
B
359 362parallel
Strand 22
B
412 414parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
921 922anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
419 420anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 482first strand
Strand 2
A
525 529anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
921 922anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 392first strand
Strand 2
B
419 420anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
478 482first strand
Strand 2
B
525 529anti-parallel
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