Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JJE entry

There are 4 chains in PDB entry 9JJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 94LEU 1206
B
 ALA 94LEU 1206
C
 ALA 94LEU 1206
D
 ALA 94LEU 1206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are192 helices in PDB entry 9JJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 130Right-handed alpha
Helix 2
AA2
A
152 171Right-handed alpha
Helix 3
AA3
A
182 196Right-handed alpha
Helix 4
AA4
A
264 281Right-handed alpha
Helix 5
AA5
A
304 316Right-handed alpha
Helix 6
AA6
A
330 339Right-handed alpha
Helix 7
AA7
A
358 369Right-handed alpha
Helix 8
AA8
A
374 386Right-handed alpha
Helix 9
AA9
A
404 417Right-handed alpha
Helix 10
AB1
A
420 431Right-handed alpha
Helix 11
AB2
A
433 441Right-handed alpha
Helix 12
AB3
A
449 463Right-handed alpha
Helix 13
AB4
A
465 474Right-handed alpha
Helix 14
AB5
A
478 483Right-handed alpha
Helix 15
AB6
A
484 494Right-handed alpha
Helix 16
AB7
A
500 513Right-handed alpha
Helix 17
AB8
A
518 531Right-handed alpha
Helix 18
AB9
A
541 545Right-handed 310
Helix 19
AC1
A
578 590Right-handed alpha
Helix 20
AC2
A
592 603Right-handed alpha
Helix 21
AC3
A
605 627Right-handed alpha
Helix 22
AC4
A
633 657Right-handed alpha
Helix 23
AC5
A
659 667Right-handed alpha
Helix 24
AC6
A
671 675Right-handed 310
Helix 25
AC7
A
678 686Right-handed alpha
Helix 26
AC8
A
688 693Right-handed alpha
Helix 27
AC9
A
694 706Right-handed alpha
Helix 28
AD1
A
714 723Right-handed alpha
Helix 29
AD2
A
724 726Right-handed 310
Helix 30
AD3
A
727 732Right-handed alpha
Helix 31
AD4
A
827 835Right-handed alpha
Helix 32
AD5
A
836 861Right-handed alpha
Helix 33
AD6
A
870 875Right-handed 310
Helix 34
AD7
A
876 899Right-handed alpha
Helix 35
AD8
A
904 913Right-handed alpha
Helix 36
AD9
A
915 934Right-handed alpha
Helix 37
AE1
A
935 938Right-handed 310
Helix 38
AE2
A
939 962Right-handed alpha
Helix 39
AE3
A
963 968Right-handed 310
Helix 40
AE4
A
970 1008Right-handed alpha
Helix 41
AE5
A
1018 1034Right-handed alpha
Helix 42
AE6
A
1039 1044Right-handed alpha
Helix 43
AE7
A
1057 1073Right-handed alpha
Helix 44
AE8
A
1076 1094Right-handed alpha
Helix 45
AE9
A
1095 1113Right-handed alpha
Helix 46
AF1
A
1121 1131Right-handed alpha
Helix 47
AF2
A
1154 1182Right-handed alpha
Helix 48
AF3
A
1183 1206Right-handed alpha
Helix 49
AF4
B
119 130Right-handed alpha
Helix 50
AF5
B
152 171Right-handed alpha
Helix 51
AF6
B
182 196Right-handed alpha
Helix 52
AF7
B
264 281Right-handed alpha
Helix 53
AF8
B
304 316Right-handed alpha
Helix 54
AF9
B
330 339Right-handed alpha
Helix 55
AG1
B
358 369Right-handed alpha
Helix 56
AG2
B
374 386Right-handed alpha
Helix 57
AG3
B
404 417Right-handed alpha
Helix 58
AG4
B
420 431Right-handed alpha
Helix 59
AG5
B
433 441Right-handed alpha
Helix 60
AG6
B
449 463Right-handed alpha
Helix 61
AG7
B
465 474Right-handed alpha
Helix 62
AG8
B
478 483Right-handed alpha
Helix 63
AG9
B
484 494Right-handed alpha
Helix 64
AH1
B
500 513Right-handed alpha
Helix 65
AH2
B
518 531Right-handed alpha
Helix 66
AH3
B
541 545Right-handed 310
Helix 67
AH4
B
578 590Right-handed alpha
Helix 68
AH5
B
592 603Right-handed alpha
Helix 69
AH6
B
605 627Right-handed alpha
Helix 70
AH7
B
633 657Right-handed alpha
Helix 71
AH8
B
659 667Right-handed alpha
Helix 72
AH9
B
671 675Right-handed 310
Helix 73
AI1
B
678 686Right-handed alpha
Helix 74
AI2
B
688 693Right-handed alpha
Helix 75
AI3
B
694 706Right-handed alpha
Helix 76
AI4
B
714 723Right-handed alpha
Helix 77
AI5
B
724 726Right-handed 310
Helix 78
AI6
B
727 732Right-handed alpha
Helix 79
AI7
B
827 835Right-handed alpha
Helix 80
AI8
B
836 861Right-handed alpha
Helix 81
AI9
B
870 875Right-handed 310
Helix 82
AJ1
B
876 899Right-handed alpha
Helix 83
AJ2
B
904 913Right-handed alpha
Helix 84
AJ3
B
915 934Right-handed alpha
Helix 85
AJ4
B
935 938Right-handed 310
Helix 86
AJ5
B
939 962Right-handed alpha
Helix 87
AJ6
B
963 968Right-handed 310
Helix 88
AJ7
B
970 1008Right-handed alpha
Helix 89
AJ8
B
1018 1034Right-handed alpha
Helix 90
AJ9
B
1039 1044Right-handed alpha
Helix 91
AK1
B
1057 1073Right-handed alpha
Helix 92
AK2
B
1076 1094Right-handed alpha
Helix 93
AK3
B
1095 1113Right-handed alpha
Helix 94
AK4
B
1121 1131Right-handed alpha
Helix 95
AK5
B
1154 1182Right-handed alpha
Helix 96
AK6
B
1183 1206Right-handed alpha
Helix 97
AK7
C
119 130Right-handed alpha
Helix 98
AK8
C
152 171Right-handed alpha
Helix 99
AK9
C
182 196Right-handed alpha
Helix 100
AL1
C
264 281Right-handed alpha
Helix 101
AL2
C
304 316Right-handed alpha
Helix 102
AL3
C
330 339Right-handed alpha
Helix 103
AL4
C
358 369Right-handed alpha
Helix 104
AL5
C
374 386Right-handed alpha
Helix 105
AL6
C
404 417Right-handed alpha
Helix 106
AL7
C
420 431Right-handed alpha
Helix 107
AL8
C
433 441Right-handed alpha
Helix 108
AL9
C
449 463Right-handed alpha
Helix 109
AM1
C
465 474Right-handed alpha
Helix 110
AM2
C
478 483Right-handed alpha
Helix 111
AM3
C
484 494Right-handed alpha
Helix 112
AM4
C
500 513Right-handed alpha
Helix 113
AM5
C
518 531Right-handed alpha
Helix 114
AM6
C
541 545Right-handed 310
Helix 115
AM7
C
578 590Right-handed alpha
Helix 116
AM8
C
592 603Right-handed alpha
Helix 117
AM9
C
605 627Right-handed alpha
Helix 118
AN1
C
633 657Right-handed alpha
Helix 119
AN2
C
659 667Right-handed alpha
Helix 120
AN3
C
671 675Right-handed 310
Helix 121
AN4
C
678 686Right-handed alpha
Helix 122
AN5
C
688 693Right-handed alpha
Helix 123
AN6
C
694 706Right-handed alpha
Helix 124
AN7
C
714 723Right-handed alpha
Helix 125
AN8
C
724 726Right-handed 310
Helix 126
AN9
C
727 732Right-handed alpha
Helix 127
AO1
C
827 835Right-handed alpha
Helix 128
AO2
C
836 861Right-handed alpha
Helix 129
AO3
C
870 875Right-handed 310
Helix 130
AO4
C
876 899Right-handed alpha
Helix 131
AO5
C
904 913Right-handed alpha
Helix 132
AO6
C
915 934Right-handed alpha
Helix 133
AO7
C
935 938Right-handed 310
Helix 134
AO8
C
939 962Right-handed alpha
Helix 135
AO9
C
963 968Right-handed 310
Helix 136
AP1
C
970 1008Right-handed alpha
Helix 137
AP2
C
1018 1034Right-handed alpha
Helix 138
AP3
C
1039 1044Right-handed alpha
Helix 139
AP4
C
1057 1073Right-handed alpha
Helix 140
AP5
C
1076 1094Right-handed alpha
Helix 141
AP6
C
1095 1113Right-handed alpha
Helix 142
AP7
C
1121 1131Right-handed alpha
Helix 143
AP8
C
1154 1182Right-handed alpha
Helix 144
AP9
C
1183 1206Right-handed alpha
Helix 145
AQ1
D
119 130Right-handed alpha
Helix 146
AQ2
D
152 171Right-handed alpha
Helix 147
AQ3
D
182 196Right-handed alpha
Helix 148
AQ4
D
264 281Right-handed alpha
Helix 149
AQ5
D
304 316Right-handed alpha
Helix 150
AQ6
D
330 339Right-handed alpha
Helix 151
AQ7
D
358 369Right-handed alpha
Helix 152
AQ8
D
374 386Right-handed alpha
Helix 153
AQ9
D
404 417Right-handed alpha
Helix 154
AR1
D
420 431Right-handed alpha
Helix 155
AR2
D
433 441Right-handed alpha
Helix 156
AR3
D
449 463Right-handed alpha
Helix 157
AR4
D
465 474Right-handed alpha
Helix 158
AR5
D
478 483Right-handed alpha
Helix 159
AR6
D
484 494Right-handed alpha
Helix 160
AR7
D
500 513Right-handed alpha
Helix 161
AR8
D
518 531Right-handed alpha
Helix 162
AR9
D
541 545Right-handed 310
Helix 163
AS1
D
578 590Right-handed alpha
Helix 164
AS2
D
592 603Right-handed alpha
Helix 165
AS3
D
605 627Right-handed alpha
Helix 166
AS4
D
633 657Right-handed alpha
Helix 167
AS5
D
659 667Right-handed alpha
Helix 168
AS6
D
671 675Right-handed 310
Helix 169
AS7
D
678 686Right-handed alpha
Helix 170
AS8
D
688 693Right-handed alpha
Helix 171
AS9
D
694 706Right-handed alpha
Helix 172
AT1
D
714 723Right-handed alpha
Helix 173
AT2
D
724 726Right-handed 310
Helix 174
AT3
D
727 732Right-handed alpha
Helix 175
AT4
D
827 835Right-handed alpha
Helix 176
AT5
D
836 861Right-handed alpha
Helix 177
AT6
D
870 875Right-handed 310
Helix 178
AT7
D
876 899Right-handed alpha
Helix 179
AT8
D
904 913Right-handed alpha
Helix 180
AT9
D
915 934Right-handed alpha
Helix 181
AU1
D
935 938Right-handed 310
Helix 182
AU2
D
939 962Right-handed alpha
Helix 183
AU3
D
963 968Right-handed 310
Helix 184
AU4
D
970 1008Right-handed alpha
Helix 185
AU5
D
1018 1034Right-handed alpha
Helix 186
AU6
D
1039 1044Right-handed alpha
Helix 187
AU7
D
1057 1073Right-handed alpha
Helix 188
AU8
D
1076 1094Right-handed alpha
Helix 189
AU9
D
1095 1113Right-handed alpha
Helix 190
AV1
D
1121 1131Right-handed alpha
Helix 191
AV2
D
1154 1182Right-handed alpha
Helix 192
AV3
D
1183 1206Right-handed alpha
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There are 4 sheets in PDB entry 9JJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
109 114anti-parallel
Strand 3
A
252 256parallel
Strand 4
A
206 211parallel
Strand 5
A
173 176parallel
Strand 6
A
139 143parallel
Strand 7
A
296 300parallel
Strand 8
A
321 325parallel
Strand 9
A
392 396parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
109 114anti-parallel
Strand 3
B
252 256parallel
Strand 4
B
206 211parallel
Strand 5
B
173 176parallel
Strand 6
B
139 143parallel
Strand 7
B
296 300parallel
Strand 8
B
321 325parallel
Strand 9
B
392 396parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 98first strand
Strand 2
C
109 114anti-parallel
Strand 3
C
252 256parallel
Strand 4
C
206 211parallel
Strand 5
C
173 176parallel
Strand 6
C
139 143parallel
Strand 7
C
296 300parallel
Strand 8
C
321 325parallel
Strand 9
C
392 396parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 98first strand
Strand 2
D
109 114anti-parallel
Strand 3
D
252 256parallel
Strand 4
D
206 211parallel
Strand 5
D
173 176parallel
Strand 6
D
139 143parallel
Strand 7
D
296 300parallel
Strand 8
D
321 325parallel
Strand 9
D
392 396parallel
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