Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JJF entry

There is 1 chain in PDB entry 9JJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 94LEU 1206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9JJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 130Right-handed alpha
Helix 2
AA2
A
152 169Right-handed alpha
Helix 3
AA3
A
182 193Right-handed alpha
Helix 4
AA4
A
264 281Right-handed alpha
Helix 5
AA5
A
304 317Right-handed alpha
Helix 6
AA6
A
330 339Right-handed alpha
Helix 7
AA7
A
358 369Right-handed alpha
Helix 8
AA8
A
374 386Right-handed alpha
Helix 9
AA9
A
404 417Right-handed alpha
Helix 10
AB1
A
420 432Right-handed alpha
Helix 11
AB2
A
433 441Right-handed alpha
Helix 12
AB3
A
453 463Right-handed alpha
Helix 13
AB4
A
465 476Right-handed alpha
Helix 14
AB5
A
478 483Right-handed alpha
Helix 15
AB6
A
484 492Right-handed alpha
Helix 16
AB7
A
500 513Right-handed alpha
Helix 17
AB8
A
518 531Right-handed alpha
Helix 18
AB9
A
536 541Right-handed alpha
Helix 19
AC1
A
542 545Right-handed 310
Helix 20
AC2
A
578 590Right-handed alpha
Helix 21
AC3
A
592 603Right-handed alpha
Helix 22
AC4
A
605 627Right-handed alpha
Helix 23
AC5
A
633 658Right-handed alpha
Helix 24
AC6
A
659 667Right-handed alpha
Helix 25
AC7
A
671 675Right-handed 310
Helix 26
AC8
A
678 686Right-handed alpha
Helix 27
AC9
A
688 693Right-handed alpha
Helix 28
AD1
A
694 706Right-handed alpha
Helix 29
AD2
A
714 721Right-handed alpha
Helix 30
AD3
A
727 732Right-handed alpha
Helix 31
AD4
A
827 835Right-handed alpha
Helix 32
AD5
A
836 861Right-handed alpha
Helix 33
AD6
A
870 875Right-handed 310
Helix 34
AD7
A
876 899Right-handed alpha
Helix 35
AD8
A
904 913Right-handed alpha
Helix 36
AD9
A
915 935Right-handed alpha
Helix 37
AE1
A
939 961Right-handed alpha
Helix 38
AE2
A
961 966Right-handed alpha
Helix 39
AE3
A
970 1008Right-handed alpha
Helix 40
AE4
A
1018 1035Right-handed alpha
Helix 41
AE5
A
1039 1044Right-handed alpha
Helix 42
AE6
A
1057 1074Right-handed alpha
Helix 43
AE7
A
1076 1094Right-handed alpha
Helix 44
AE8
A
1095 1113Right-handed alpha
Helix 45
AE9
A
1121 1131Right-handed alpha
Helix 46
AF1
A
1154 1182Right-handed alpha
Helix 47
AF2
A
1183 1206Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9JJF.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
109 114anti-parallel
Strand 3
A
252 256parallel
Strand 4
A
206 211parallel
Strand 5
A
173 176parallel
Strand 6
A
139 144parallel
Strand 7
A
296 301parallel
Strand 8
A
321 323parallel
Strand 9
A
392 394parallel
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