Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JJG entry

There are 3 chains in PDB entry 9JJG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 41	LEU 569
B	GLY 24	LEU 569
C	GLY 24	LEU 569

There are 27 helices in PDB entry 9JJG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	53	Right-handed alpha
Helix 2	AA2	A	54	57	Right-handed 310
Helix 3	AA3	A	66	70	Right-handed 310
Helix 4	AA4	A	96	99	Right-handed 310
Helix 5	AA5	A	100	107	Right-handed alpha
Helix 6	AA6	A	149	153	Right-handed 310
Helix 7	AA7	A	244	249	Right-handed alpha
Helix 8	AA8	A	369	373	Right-handed 310
Helix 9	AA9	A	491	501	Right-handed alpha
Helix 10	AB1	B	42	53	Right-handed alpha
Helix 11	AB2	B	54	57	Right-handed 310
Helix 12	AB3	B	66	71	Right-handed alpha
Helix 13	AB4	B	96	99	Right-handed 310
Helix 14	AB5	B	100	107	Right-handed alpha
Helix 15	AB6	B	149	153	Right-handed 310
Helix 16	AB7	B	244	249	Right-handed alpha
Helix 17	AB8	B	369	373	Right-handed 310
Helix 18	AB9	B	491	501	Right-handed alpha
Helix 19	AC1	C	42	53	Right-handed alpha
Helix 20	AC2	C	54	57	Right-handed 310
Helix 21	AC3	C	66	71	Right-handed alpha
Helix 22	AC4	C	96	99	Right-handed 310
Helix 23	AC5	C	100	107	Right-handed alpha
Helix 24	AC6	C	149	153	Right-handed 310
Helix 25	AC7	C	244	249	Right-handed alpha
Helix 26	AC8	C	369	373	Right-handed 310
Helix 27	AC9	C	491	501	Right-handed alpha

There are 21 sheets in PDB entry 9JJG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	81	first strand
Strand 2	A	208	217	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	166	170	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	94	first strand
Strand 2	A	189	199	anti-parallel
Strand 3	A	130	138	anti-parallel
Strand 4	A	155	159	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	110	114	anti-parallel
Strand 3	A	222	226	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	488	first strand
Strand 2	A	459	466	anti-parallel
Strand 3	A	261	266	anti-parallel
Strand 4	A	545	546	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	488	first strand
Strand 2	A	459	466	anti-parallel
Strand 3	A	534	536	anti-parallel
Strand 4	A	523	528	anti-parallel
Strand 5	A	511	518	anti-parallel
Strand 6	A	552	560	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	417	420	anti-parallel
Strand 3	A	353	361	anti-parallel
Strand 4	A	374	381	anti-parallel
Strand 5	A	398	403	anti-parallel
Strand 6	A	315	319	anti-parallel
Strand 7	A	301	303	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	417	420	anti-parallel
Strand 3	A	353	361	anti-parallel
Strand 4	A	425	427	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	166	170	parallel
Strand 3	B	117	123	anti-parallel
Strand 4	B	208	217	anti-parallel
Strand 5	B	73	81	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	94	first strand
Strand 2	B	189	199	anti-parallel
Strand 3	B	130	138	anti-parallel
Strand 4	B	155	159	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	110	114	anti-parallel
Strand 3	B	222	226	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	488	first strand
Strand 2	B	459	466	anti-parallel
Strand 3	B	261	266	anti-parallel
Strand 4	B	545	546	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	488	first strand
Strand 2	B	459	466	anti-parallel
Strand 3	B	534	536	anti-parallel
Strand 4	B	523	528	anti-parallel
Strand 5	B	511	518	anti-parallel
Strand 6	B	552	560	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	417	420	anti-parallel
Strand 3	B	353	361	anti-parallel
Strand 4	B	374	381	anti-parallel
Strand 5	B	398	403	anti-parallel
Strand 6	B	315	319	anti-parallel
Strand 7	B	301	303	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	417	420	anti-parallel
Strand 3	B	353	361	anti-parallel
Strand 4	B	425	427	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	166	170	parallel
Strand 3	C	117	123	anti-parallel
Strand 4	C	208	217	anti-parallel
Strand 5	C	73	81	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	94	first strand
Strand 2	C	189	199	anti-parallel
Strand 3	C	130	138	anti-parallel
Strand 4	C	155	159	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	110	114	anti-parallel
Strand 3	C	222	226	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	488	first strand
Strand 2	C	459	466	anti-parallel
Strand 3	C	261	266	anti-parallel
Strand 4	C	545	546	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	488	first strand
Strand 2	C	459	466	anti-parallel
Strand 3	C	534	536	anti-parallel
Strand 4	C	523	528	anti-parallel
Strand 5	C	511	518	anti-parallel
Strand 6	C	552	560	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	417	420	anti-parallel
Strand 3	C	353	361	anti-parallel
Strand 4	C	374	381	anti-parallel
Strand 5	C	398	403	anti-parallel
Strand 6	C	315	319	anti-parallel
Strand 7	C	301	303	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	417	420	anti-parallel
Strand 3	C	353	361	anti-parallel
Strand 4	C	425	427	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JJG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJG