Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JJO entry

There is 1 chain in PDB entry 9JJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 14THR 1348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9JJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 44Right-handed alpha
Helix 2
AA2
A
46 54Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
93 122Right-handed alpha
Helix 5
AA5
A
123 139Right-handed alpha
Helix 6
AA6
A
180 182Right-handed 310
Helix 7
AA7
A
249 260Right-handed alpha
Helix 8
AA8
A
267 302Right-handed alpha
Helix 9
AA9
A
309 323Right-handed alpha
Helix 10
AB1
A
329 348Right-handed alpha
Helix 11
AB2
A
375 392Right-handed alpha
Helix 12
AB3
A
402 408Right-handed alpha
Helix 13
AB4
A
575 577Right-handed 310
Helix 14
AB5
A
578 594Right-handed alpha
Helix 15
AB6
A
595 616Right-handed alpha
Helix 16
AB7
A
630 638Right-handed alpha
Helix 17
AB8
A
640 645Right-handed 310
Helix 18
AB9
A
705 712Right-handed alpha
Helix 19
AC1
A
726 744Right-handed alpha
Helix 20
AC2
A
759 763Right-handed 310
Helix 21
AC3
A
814 819Right-handed alpha
Helix 22
AC4
A
834 846Right-handed alpha
Helix 23
AC5
A
861 869Right-handed alpha
Helix 24
AC6
A
957 965Right-handed alpha
Helix 25
AC7
A
979 992Right-handed alpha
Helix 26
AC8
A
1007 1015Right-handed alpha
Helix 27
AC9
A
1050 1060Right-handed alpha
Helix 28
AD1
A
1073 1113Right-handed alpha
Helix 29
AD2
A
1120 1130Right-handed alpha
Helix 30
AD3
A
1130 1138Right-handed alpha
Helix 31
AD4
A
1161 1201Right-handed alpha
Helix 32
AD5
A
1225 1252Right-handed alpha
Helix 33
AD6
A
1262 1265Right-handed 310
Helix 34
AD7
A
1266 1289Right-handed alpha
Helix 35
AD8
A
1301 1305Right-handed 310
Helix 36
AD9
A
1306 1348Right-handed alpha
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There are 7 sheets in PDB entry 9JJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 178first strand
Strand 2
A
165 170anti-parallel
Strand 3
A
187 189anti-parallel
Strand 4
A
243 245anti-parallel
Strand 5
A
200 202anti-parallel
Strand 6
A
210 211anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
878 880first strand
Strand 2
A
974 976parallel
Strand 3
A
850 854parallel
Strand 4
A
412 415parallel
Strand 5
A
997 1002parallel
Strand 6
A
1017 1021parallel
Strand 7
A
1065 1067parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 557first strand
Strand 2
A
429 433anti-parallel
Strand 3
A
821 829anti-parallel
Strand 4
A
713 717parallel
Strand 5
A
722 724anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 557first strand
Strand 2
A
429 433anti-parallel
Strand 3
A
821 829anti-parallel
Strand 4
A
745 753anti-parallel
Strand 5
A
698 704anti-parallel
Strand 6
A
683 692anti-parallel
Strand 7
A
647 657anti-parallel
Strand 8
A
765 769parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
552 553anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 560first strand
Strand 2
A
568 569anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 757first strand
Strand 2
A
788 789anti-parallel
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