Analysis of interatomic Contacts of Structural Units in PDB entry:
9JJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JJW entry

There is 1 chain in PDB entry 9JJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 147THR 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9JJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
169 176Right-handed alpha
Helix 2
AA2
A
197 216Right-handed alpha
Helix 3
AA3
A
275 290Right-handed alpha
Helix 4
AA4
A
302 313Right-handed alpha
Helix 5
AA5
A
314 315Right-handed 310
Helix 6
AA6
A
316 324Right-handed 310
Helix 7
AA7
A
341 358Right-handed alpha
Helix 8
AA8
A
362 371Right-handed alpha
Helix 9
AA9
A
393 397Right-handed 310
Helix 10
AB1
A
398 415Right-handed alpha
Helix 11
AB2
A
416 419Right-handed 310
Helix 12
AB3
A
430 448Right-handed alpha
Helix 13
AB4
A
454 481Right-handed alpha
Helix 14
AB5
A
487 510Right-handed alpha
Helix 15
AB6
A
514 540Right-handed alpha
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There are 2 sheets in PDB entry 9JJW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
152 158anti-parallel
Strand 3
A
243 246anti-parallel
Strand 4
A
257 266anti-parallel
Strand 5
A
250 254anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
152 158anti-parallel
Strand 3
A
243 246anti-parallel
Strand 4
A
257 266anti-parallel
Strand 5
A
185 192parallel
Strand 6
A
292 298parallel
Strand 7
A
327 334parallel
Strand 8
A
374 380parallel
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