Analysis of interatomic Contacts of Structural Units in PDB entry:
9JK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JK5 entry

There is 1 chain in PDB entry 9JK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 15SER 1354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9JK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 44Right-handed alpha
Helix 2
AA2
A
46 54Right-handed alpha
Helix 3
AA3
A
66 83Right-handed alpha
Helix 4
AA4
A
93 122Right-handed alpha
Helix 5
AA5
A
122 139Right-handed alpha
Helix 6
AA6
A
180 182Right-handed 310
Helix 7
AA7
A
249 260Right-handed alpha
Helix 8
AA8
A
267 302Right-handed alpha
Helix 9
AA9
A
309 323Right-handed alpha
Helix 10
AB1
A
324 326Right-handed 310
Helix 11
AB2
A
329 349Right-handed alpha
Helix 12
AB3
A
375 391Right-handed alpha
Helix 13
AB4
A
402 408Right-handed alpha
Helix 14
AB5
A
575 581Right-handed 310
Helix 15
AB6
A
582 594Right-handed alpha
Helix 16
AB7
A
595 616Right-handed alpha
Helix 17
AB8
A
630 638Right-handed alpha
Helix 18
AB9
A
640 645Right-handed 310
Helix 19
AC1
A
705 712Right-handed alpha
Helix 20
AC2
A
726 743Right-handed alpha
Helix 21
AC3
A
759 763Right-handed 310
Helix 22
AC4
A
814 819Right-handed alpha
Helix 23
AC5
A
834 847Right-handed alpha
Helix 24
AC6
A
858 866Right-handed alpha
Helix 25
AC7
A
957 965Right-handed alpha
Helix 26
AC8
A
979 993Right-handed alpha
Helix 27
AC9
A
1005 1007Right-handed 310
Helix 28
AD1
A
1008 1015Right-handed alpha
Helix 29
AD2
A
1050 1060Right-handed alpha
Helix 30
AD3
A
1074 1113Right-handed alpha
Helix 31
AD4
A
1120 1140Right-handed alpha
Helix 32
AD5
A
1161 1201Right-handed alpha
Helix 33
AD6
A
1225 1251Right-handed alpha
Helix 34
AD7
A
1262 1266Right-handed 310
Helix 35
AD8
A
1268 1292Right-handed alpha
Helix 36
AD9
A
1307 1352Right-handed alpha
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There are 7 sheets in PDB entry 9JK5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
173 178anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
241 244anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
878 880first strand
Strand 2
A
974 976parallel
Strand 3
A
850 854parallel
Strand 4
A
412 415parallel
Strand 5
A
997 1002parallel
Strand 6
A
1017 1021parallel
Strand 7
A
1065 1067parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 557first strand
Strand 2
A
428 436anti-parallel
Strand 3
A
821 830anti-parallel
Strand 4
A
713 717parallel
Strand 5
A
722 724anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 557first strand
Strand 2
A
428 436anti-parallel
Strand 3
A
821 830anti-parallel
Strand 4
A
745 753anti-parallel
Strand 5
A
698 704anti-parallel
Strand 6
A
683 692anti-parallel
Strand 7
A
647 657anti-parallel
Strand 8
A
766 769parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 560first strand
Strand 2
A
568 569anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 757first strand
Strand 2
A
788 789anti-parallel
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