Analysis of interatomic Contacts of Structural Units in PDB entry:
9JK8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JK8 entry

There are 6 chains in PDB entry 9JK8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 114	GLN 519
B	THR 114	GLN 519
C	THR 114	GLN 519
D	THR 114	GLN 519
E	THR 114	GLN 519
F	THR 114	GLN 519

There are 85 helices in PDB entry 9JK8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	115	138	Right-handed alpha
Helix 2	AA2	A	146	172	Right-handed alpha
Helix 3	AA3	A	183	207	Right-handed alpha
Helix 4	AA4	A	215	242	Right-handed alpha
Helix 5	AA5	A	271	287	Right-handed alpha
Helix 6	AA6	A	292	308	Right-handed alpha
Helix 7	AA7	A	330	339	Right-handed alpha
Helix 8	AA8	A	341	371	Right-handed alpha
Helix 9	AA9	A	389	398	Right-handed alpha
Helix 10	AB1	A	401	412	Right-handed alpha
Helix 11	AB2	A	419	433	Right-handed alpha
Helix 12	AB3	A	436	446	Right-handed alpha
Helix 13	AB4	A	449	453	Right-handed 310
Helix 14	AB5	A	508	512	Right-handed 310
Helix 15	AB6	B	115	138	Right-handed alpha
Helix 16	AB7	B	146	172	Right-handed alpha
Helix 17	AB8	B	183	207	Right-handed alpha
Helix 18	AB9	B	215	242	Right-handed alpha
Helix 19	AC1	B	271	287	Right-handed alpha
Helix 20	AC2	B	292	294	Right-handed 310
Helix 21	AC3	B	295	308	Right-handed alpha
Helix 22	AC4	B	330	339	Right-handed alpha
Helix 23	AC5	B	341	371	Right-handed alpha
Helix 24	AC6	B	389	398	Right-handed alpha
Helix 25	AC7	B	401	412	Right-handed alpha
Helix 26	AC8	B	419	433	Right-handed alpha
Helix 27	AC9	B	436	446	Right-handed alpha
Helix 28	AD1	B	449	453	Right-handed 310
Helix 29	AD2	B	508	512	Right-handed 310
Helix 30	AD3	C	115	138	Right-handed alpha
Helix 31	AD4	C	146	172	Right-handed alpha
Helix 32	AD5	C	183	207	Right-handed alpha
Helix 33	AD6	C	215	242	Right-handed alpha
Helix 34	AD7	C	271	287	Right-handed alpha
Helix 35	AD8	C	292	308	Right-handed alpha
Helix 36	AD9	C	330	339	Right-handed alpha
Helix 37	AE1	C	341	371	Right-handed alpha
Helix 38	AE2	C	389	398	Right-handed alpha
Helix 39	AE3	C	401	412	Right-handed alpha
Helix 40	AE4	C	419	433	Right-handed alpha
Helix 41	AE5	C	436	446	Right-handed alpha
Helix 42	AE6	C	449	453	Right-handed 310
Helix 43	AE7	C	508	512	Right-handed 310
Helix 44	AE8	D	115	138	Right-handed alpha
Helix 45	AE9	D	146	172	Right-handed alpha
Helix 46	AF1	D	183	207	Right-handed alpha
Helix 47	AF2	D	215	242	Right-handed alpha
Helix 48	AF3	D	271	287	Right-handed alpha
Helix 49	AF4	D	292	308	Right-handed alpha
Helix 50	AF5	D	330	339	Right-handed alpha
Helix 51	AF6	D	341	371	Right-handed alpha
Helix 52	AF7	D	389	398	Right-handed alpha
Helix 53	AF8	D	401	412	Right-handed alpha
Helix 54	AF9	D	419	433	Right-handed alpha
Helix 55	AG1	D	436	446	Right-handed alpha
Helix 56	AG2	D	449	453	Right-handed 310
Helix 57	AG3	D	508	512	Right-handed 310
Helix 58	AG4	E	115	138	Right-handed alpha
Helix 59	AG5	E	146	172	Right-handed alpha
Helix 60	AG6	E	183	207	Right-handed alpha
Helix 61	AG7	E	215	242	Right-handed alpha
Helix 62	AG8	E	271	287	Right-handed alpha
Helix 63	AG9	E	292	308	Right-handed alpha
Helix 64	AH1	E	330	339	Right-handed alpha
Helix 65	AH2	E	341	371	Right-handed alpha
Helix 66	AH3	E	389	398	Right-handed alpha
Helix 67	AH4	E	401	412	Right-handed alpha
Helix 68	AH5	E	419	433	Right-handed alpha
Helix 69	AH6	E	436	446	Right-handed alpha
Helix 70	AH7	E	449	453	Right-handed 310
Helix 71	AH8	E	508	512	Right-handed 310
Helix 72	AH9	F	115	138	Right-handed alpha
Helix 73	AI1	F	146	172	Right-handed alpha
Helix 74	AI2	F	183	207	Right-handed alpha
Helix 75	AI3	F	215	242	Right-handed alpha
Helix 76	AI4	F	271	287	Right-handed alpha
Helix 77	AI5	F	292	308	Right-handed alpha
Helix 78	AI6	F	330	339	Right-handed alpha
Helix 79	AI7	F	341	371	Right-handed alpha
Helix 80	AI8	F	389	398	Right-handed alpha
Helix 81	AI9	F	401	412	Right-handed alpha
Helix 82	AJ1	F	419	433	Right-handed alpha
Helix 83	AJ2	F	436	446	Right-handed alpha
Helix 84	AJ3	F	449	453	Right-handed 310
Helix 85	AJ4	F	508	512	Right-handed 310

There are 14 sheets in PDB entry 9JK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	B	500	504	parallel
Strand 3	A	463	467	parallel
Strand 4	A	480	484	anti-parallel
Strand 5	A	489	496	anti-parallel
Strand 6	A	250	256	anti-parallel
Strand 7	A	262	267	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	375	first strand
Strand 2	C	514	515	anti-parallel
Strand 3	A	387	388	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	501	first strand
Strand 2	C	177	178	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	375	first strand
Strand 2	A	514	515	anti-parallel
Strand 3	B	387	388	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	C	500	501	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	267	first strand
Strand 2	B	250	256	anti-parallel
Strand 3	B	489	496	anti-parallel
Strand 4	B	480	484	anti-parallel
Strand 5	B	464	467	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	375	first strand
Strand 2	B	514	515	anti-parallel
Strand 3	C	387	388	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	267	first strand
Strand 2	C	250	256	anti-parallel
Strand 3	C	489	496	anti-parallel
Strand 4	C	480	484	anti-parallel
Strand 5	C	464	467	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	178	first strand
Strand 2	E	500	504	parallel
Strand 3	D	463	467	parallel
Strand 4	D	480	484	anti-parallel
Strand 5	D	489	496	anti-parallel
Strand 6	D	250	256	anti-parallel
Strand 7	D	262	267	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	375	first strand
Strand 2	F	514	515	anti-parallel
Strand 3	D	387	388	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	177	178	first strand
Strand 2	D	500	504	parallel
Strand 3	F	463	467	parallel
Strand 4	F	480	484	anti-parallel
Strand 5	F	489	496	anti-parallel
Strand 6	F	250	256	anti-parallel
Strand 7	F	262	267	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	373	375	first strand
Strand 2	D	514	515	anti-parallel
Strand 3	E	387	388	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	178	first strand
Strand 2	F	500	504	parallel
Strand 3	E	463	467	parallel
Strand 4	E	480	484	anti-parallel
Strand 5	E	489	496	anti-parallel
Strand 6	E	250	256	anti-parallel
Strand 7	E	262	267	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	373	375	first strand
Strand 2	E	514	515	anti-parallel
Strand 3	F	387	388	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JK8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JK8