Analysis of interatomic Contacts of Structural Units in PDB entry:
9JKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JKB entry

There are 5 chains in PDB entry 9JKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PRO 177SER 383
A
 GLN 14TYR 774
B
 PRO 2TRP 159
R
 ARG 21ASP 36
D
 ALA 56TYR 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9JKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
184 189Right-handed alpha
Helix 2
AA2
C
192 198Right-handed alpha
Helix 3
AA3
C
224 228Right-handed 310
Helix 4
AA4
C
276 281Right-handed alpha
Helix 5
AA5
C
304 314Right-handed alpha
Helix 6
AA6
C
315 319Right-handed 310
Helix 7
AA7
C
340 348Right-handed alpha
Helix 8
AA8
C
349 354Right-handed 310
Helix 9
AA9
C
369 380Right-handed alpha
Helix 10
AB1
A
16 33Right-handed alpha
Helix 11
AB2
A
38 54Right-handed alpha
Helix 12
AB3
A
85 107Right-handed alpha
Helix 13
AB4
A
111 137Right-handed alpha
Helix 14
AB5
A
144 152Right-handed alpha
Helix 15
AB6
A
158 171Right-handed alpha
Helix 16
AB7
A
171 193Right-handed alpha
Helix 17
AB8
A
197 211Right-handed alpha
Helix 18
AB9
A
225 232Right-handed alpha
Helix 19
AC1
A
232 255Right-handed alpha
Helix 20
AC2
A
256 279Right-handed alpha
Helix 21
AC3
A
282 296Right-handed alpha
Helix 22
AC4
A
299 313Right-handed alpha
Helix 23
AC5
A
315 327Right-handed alpha
Helix 24
AC6
A
332 356Right-handed alpha
Helix 25
AC7
A
357 361Right-handed 310
Helix 26
AC8
A
362 384Right-handed alpha
Helix 27
AC9
A
388 405Right-handed alpha
Helix 28
AD1
A
406 412Right-handed alpha
Helix 29
AD2
A
416 429Right-handed alpha
Helix 30
AD3
A
438 454Right-handed alpha
Helix 31
AD4
A
458 476Right-handed alpha
Helix 32
AD5
A
481 497Right-handed alpha
Helix 33
AD6
A
501 528Right-handed alpha
Helix 34
AD7
A
556 574Right-handed alpha
Helix 35
AD8
A
605 617Right-handed alpha
Helix 36
AD9
A
622 630Right-handed alpha
Helix 37
AE1
A
632 647Right-handed alpha
Helix 38
AE2
A
688 723Right-handed alpha
Helix 39
AE3
A
726 739Right-handed alpha
Helix 40
AE4
A
745 758Right-handed alpha
Helix 41
AE5
B
18 22Right-handed alpha
Helix 42
AE6
B
24 33Right-handed alpha
Helix 43
AE7
B
51 65Right-handed alpha
Helix 44
AE8
B
86 93Right-handed alpha
Helix 45
AE9
B
96 110Right-handed alpha
Helix 46
AF1
B
112 128Right-handed alpha
Helix 47
AF2
B
131 140Right-handed alpha
Helix 48
AF3
B
146 158Right-handed alpha
Helix 49
AF4
D
63 73Right-handed alpha
Helix 50
AF5
D
75 84Right-handed alpha
Helix 51
AF6
D
86 92Right-handed alpha
Helix 52
AF7
D
95 107Right-handed alpha
Helix 53
AF8
D
121 125Right-handed 310
Helix 54
AF9
D
138 147Right-handed alpha
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There are 6 sheets in PDB entry 9JKB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 235first strand
Strand 2
C
180 182parallel
Strand 3
C
289 294parallel
Strand 4
C
325 331parallel
Strand 5
C
357 363parallel
Strand 6
D
112 114anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 541first strand
Strand 2
R
30 35parallel
Strand 3
A
577 578anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 589first strand
Strand 2
A
602 604anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 621first strand
Strand 2
A
668 670anti-parallel
Strand 3
A
650 651anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 764first strand
Strand 2
A
772 773anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
16 17anti-parallel
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