Analysis of interatomic Contacts of Structural Units in PDB entry:
9JKC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JKC entry

There are 5 chains in PDB entry 9JKC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 88	ASP 763
B	ARG 89	ASP 763
C	ARG 89	ASP 763
D	ALA 88	ASP 763
E	ARG 89	ASP 763

There are172 helices in PDB entry 9JKC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	97	105	Right-handed alpha
Helix 2	AA2	A	106	109	Right-handed 310
Helix 3	AA3	A	126	138	Right-handed alpha
Helix 4	AA4	A	168	183	Right-handed alpha
Helix 5	AA5	A	185	199	Right-handed alpha
Helix 6	AA6	A	206	211	Right-handed alpha
Helix 7	AA7	A	212	218	Right-handed 310
Helix 8	AA8	A	226	247	Right-handed alpha
Helix 9	AA9	A	255	259	Right-handed 310
Helix 10	AB1	A	260	268	Right-handed alpha
Helix 11	AB2	A	273	278	Right-handed 310
Helix 12	AB3	A	286	309	Right-handed alpha
Helix 13	AB4	A	315	320	Right-handed alpha
Helix 14	AB5	A	337	341	Right-handed 310
Helix 15	AB6	A	354	376	Right-handed alpha
Helix 16	AB7	A	390	402	Right-handed alpha
Helix 17	AB8	A	420	425	Right-handed alpha
Helix 18	AB9	A	426	441	Right-handed alpha
Helix 19	AC1	A	447	467	Right-handed alpha
Helix 20	AC2	A	490	515	Right-handed alpha
Helix 21	AC3	A	518	530	Right-handed alpha
Helix 22	AC4	A	545	550	Right-handed alpha
Helix 23	AC5	A	556	566	Right-handed alpha
Helix 24	AC6	A	581	584	Right-handed 310
Helix 25	AC7	A	604	615	Right-handed alpha
Helix 26	AC8	A	619	634	Right-handed alpha
Helix 27	AC9	A	638	652	Right-handed alpha
Helix 28	AD1	A	662	677	Right-handed alpha
Helix 29	AD2	A	681	693	Right-handed alpha
Helix 30	AD3	A	698	705	Right-handed alpha
Helix 31	AD4	A	734	742	Right-handed alpha
Helix 32	AD5	A	744	755	Right-handed alpha
Helix 33	AD6	A	757	761	Right-handed 310
Helix 34	AD7	B	97	106	Right-handed alpha
Helix 35	AD8	B	107	109	Right-handed 310
Helix 36	AD9	B	125	128	Right-handed 310
Helix 37	AE1	B	129	138	Right-handed alpha
Helix 38	AE2	B	168	181	Right-handed alpha
Helix 39	AE3	B	185	200	Right-handed alpha
Helix 40	AE4	B	206	215	Right-handed alpha
Helix 41	AE5	B	216	218	Right-handed 310
Helix 42	AE6	B	226	247	Right-handed alpha
Helix 43	AE7	B	255	259	Right-handed 310
Helix 44	AE8	B	260	268	Right-handed alpha
Helix 45	AE9	B	273	278	Right-handed 310
Helix 46	AF1	B	286	299	Right-handed alpha
Helix 47	AF2	B	299	309	Right-handed alpha
Helix 48	AF3	B	314	319	Right-handed 310
Helix 49	AF4	B	354	375	Right-handed alpha
Helix 50	AF5	B	390	402	Right-handed alpha
Helix 51	AF6	B	420	425	Right-handed alpha
Helix 52	AF7	B	426	440	Right-handed alpha
Helix 53	AF8	B	447	467	Right-handed alpha
Helix 54	AF9	B	489	515	Right-handed alpha
Helix 55	AG1	B	518	530	Right-handed alpha
Helix 56	AG2	B	545	550	Right-handed alpha
Helix 57	AG3	B	556	566	Right-handed alpha
Helix 58	AG4	B	604	613	Right-handed alpha
Helix 59	AG5	B	619	635	Right-handed alpha
Helix 60	AG6	B	638	652	Right-handed alpha
Helix 61	AG7	B	662	678	Right-handed alpha
Helix 62	AG8	B	681	693	Right-handed alpha
Helix 63	AG9	B	698	704	Right-handed alpha
Helix 64	AH1	B	734	742	Right-handed alpha
Helix 65	AH2	B	744	755	Right-handed alpha
Helix 66	AH3	B	757	762	Right-handed 310
Helix 67	AH4	C	97	106	Right-handed alpha
Helix 68	AH5	C	107	109	Right-handed 310
Helix 69	AH6	C	125	128	Right-handed 310
Helix 70	AH7	C	129	138	Right-handed alpha
Helix 71	AH8	C	168	180	Right-handed alpha
Helix 72	AH9	C	181	183	Right-handed 310
Helix 73	AI1	C	185	198	Right-handed alpha
Helix 74	AI2	C	206	215	Right-handed alpha
Helix 75	AI3	C	216	218	Right-handed 310
Helix 76	AI4	C	226	247	Right-handed alpha
Helix 77	AI5	C	255	259	Right-handed 310
Helix 78	AI6	C	260	268	Right-handed alpha
Helix 79	AI7	C	273	278	Right-handed 310
Helix 80	AI8	C	286	299	Right-handed alpha
Helix 81	AI9	C	299	309	Right-handed alpha
Helix 82	AJ1	C	315	320	Right-handed alpha
Helix 83	AJ2	C	354	376	Right-handed alpha
Helix 84	AJ3	C	390	402	Right-handed alpha
Helix 85	AJ4	C	420	425	Right-handed alpha
Helix 86	AJ5	C	426	440	Right-handed alpha
Helix 87	AJ6	C	442	446	Right-handed 310
Helix 88	AJ7	C	447	466	Right-handed alpha
Helix 89	AJ8	C	490	515	Right-handed alpha
Helix 90	AJ9	C	518	530	Right-handed alpha
Helix 91	AK1	C	545	550	Right-handed alpha
Helix 92	AK2	C	556	566	Right-handed alpha
Helix 93	AK3	C	581	585	Right-handed 310
Helix 94	AK4	C	604	613	Right-handed alpha
Helix 95	AK5	C	619	635	Right-handed alpha
Helix 96	AK6	C	638	652	Right-handed alpha
Helix 97	AK7	C	662	678	Right-handed alpha
Helix 98	AK8	C	684	693	Right-handed alpha
Helix 99	AK9	C	698	703	Right-handed alpha
Helix 100	AL1	C	704	707	Right-handed 310
Helix 101	AL2	C	734	742	Right-handed alpha
Helix 102	AL3	C	744	756	Right-handed alpha
Helix 103	AL4	C	757	761	Right-handed 310
Helix 104	AL5	D	97	106	Right-handed alpha
Helix 105	AL6	D	107	109	Right-handed 310
Helix 106	AL7	D	125	128	Right-handed 310
Helix 107	AL8	D	129	138	Right-handed alpha
Helix 108	AL9	D	168	181	Right-handed alpha
Helix 109	AM1	D	185	200	Right-handed alpha
Helix 110	AM2	D	206	211	Right-handed alpha
Helix 111	AM3	D	212	218	Right-handed 310
Helix 112	AM4	D	226	247	Right-handed alpha
Helix 113	AM5	D	255	259	Right-handed 310
Helix 114	AM6	D	260	265	Right-handed alpha
Helix 115	AM7	D	266	268	Right-handed 310
Helix 116	AM8	D	286	309	Right-handed alpha
Helix 117	AM9	D	315	320	Right-handed alpha
Helix 118	AN1	D	337	341	Right-handed 310
Helix 119	AN2	D	354	376	Right-handed alpha
Helix 120	AN3	D	390	402	Right-handed alpha
Helix 121	AN4	D	420	425	Right-handed alpha
Helix 122	AN5	D	426	440	Right-handed alpha
Helix 123	AN6	D	442	446	Right-handed 310
Helix 124	AN7	D	447	467	Right-handed alpha
Helix 125	AN8	D	490	515	Right-handed alpha
Helix 126	AN9	D	518	528	Right-handed alpha
Helix 127	AO1	D	545	550	Right-handed alpha
Helix 128	AO2	D	556	566	Right-handed alpha
Helix 129	AO3	D	604	613	Right-handed alpha
Helix 130	AO4	D	619	634	Right-handed alpha
Helix 131	AO5	D	638	652	Right-handed alpha
Helix 132	AO6	D	662	677	Right-handed alpha
Helix 133	AO7	D	683	693	Right-handed alpha
Helix 134	AO8	D	698	704	Right-handed alpha
Helix 135	AO9	D	734	742	Right-handed alpha
Helix 136	AP1	D	744	756	Right-handed alpha
Helix 137	AP2	D	757	762	Right-handed 310
Helix 138	AP3	E	97	106	Right-handed alpha
Helix 139	AP4	E	107	109	Right-handed 310
Helix 140	AP5	E	125	128	Right-handed 310
Helix 141	AP6	E	129	138	Right-handed alpha
Helix 142	AP7	E	168	181	Right-handed alpha
Helix 143	AP8	E	185	200	Right-handed alpha
Helix 144	AP9	E	206	211	Right-handed alpha
Helix 145	AQ1	E	212	218	Right-handed 310
Helix 146	AQ2	E	226	247	Right-handed alpha
Helix 147	AQ3	E	255	259	Right-handed 310
Helix 148	AQ4	E	260	266	Right-handed alpha
Helix 149	AQ5	E	286	309	Right-handed alpha
Helix 150	AQ6	E	314	319	Right-handed 310
Helix 151	AQ7	E	337	341	Right-handed 310
Helix 152	AQ8	E	354	376	Right-handed alpha
Helix 153	AQ9	E	390	402	Right-handed alpha
Helix 154	AR1	E	420	425	Right-handed alpha
Helix 155	AR2	E	426	440	Right-handed alpha
Helix 156	AR3	E	442	446	Right-handed 310
Helix 157	AR4	E	447	466	Right-handed alpha
Helix 158	AR5	E	489	515	Right-handed alpha
Helix 159	AR6	E	518	530	Right-handed alpha
Helix 160	AR7	E	545	550	Right-handed alpha
Helix 161	AR8	E	556	566	Right-handed alpha
Helix 162	AR9	E	581	585	Right-handed 310
Helix 163	AS1	E	604	613	Right-handed alpha
Helix 164	AS2	E	619	634	Right-handed alpha
Helix 165	AS3	E	638	652	Right-handed alpha
Helix 166	AS4	E	662	677	Right-handed alpha
Helix 167	AS5	E	683	693	Right-handed alpha
Helix 168	AS6	E	698	704	Right-handed alpha
Helix 169	AS7	E	705	707	Right-handed 310
Helix 170	AS8	E	734	743	Right-handed alpha
Helix 171	AS9	E	744	756	Right-handed alpha
Helix 172	AT1	E	757	762	Right-handed 310

There are 28 sheets in PDB entry 9JKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	149	150	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	477	480	anti-parallel
Strand 3	A	468	471	anti-parallel
Strand 4	A	323	326	parallel
Strand 5	A	351	352	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	331	334	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	537	first strand
Strand 2	A	540	544	anti-parallel
Strand 3	A	413	415	anti-parallel
Strand 4	A	577	579	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	419	first strand
Strand 2	A	570	571	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	587	first strand
Strand 2	A	590	595	anti-parallel
Strand 3	A	598	603	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	149	150	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	477	480	anti-parallel
Strand 3	B	468	471	anti-parallel
Strand 4	B	323	326	parallel
Strand 5	B	351	352	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	331	332	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	537	first strand
Strand 2	B	540	544	anti-parallel
Strand 3	B	413	415	anti-parallel
Strand 4	B	577	579	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	587	first strand
Strand 2	B	590	595	anti-parallel
Strand 3	B	598	603	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	149	150	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	146	first strand
Strand 2	C	477	481	anti-parallel
Strand 3	C	467	471	anti-parallel
Strand 4	C	323	326	parallel
Strand 5	C	351	352	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	342	343	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	537	first strand
Strand 2	C	540	544	anti-parallel
Strand 3	C	413	415	anti-parallel
Strand 4	C	577	579	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	419	first strand
Strand 2	C	570	571	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	590	595	first strand
Strand 2	C	598	603	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	149	150	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	477	480	anti-parallel
Strand 3	D	468	471	anti-parallel
Strand 4	D	323	326	parallel
Strand 5	D	351	352	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	331	332	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	534	537	first strand
Strand 2	D	540	544	anti-parallel
Strand 3	D	413	416	anti-parallel
Strand 4	D	577	579	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	419	first strand
Strand 2	D	570	571	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	590	595	first strand
Strand 2	D	598	603	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	149	150	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	146	first strand
Strand 2	E	476	481	anti-parallel
Strand 3	E	467	472	anti-parallel
Strand 4	E	323	326	parallel
Strand 5	E	351	352	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	534	537	first strand
Strand 2	E	540	544	anti-parallel
Strand 3	E	413	415	anti-parallel
Strand 4	E	577	579	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	418	419	first strand
Strand 2	E	570	571	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	590	595	first strand
Strand 2	E	598	603	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JKC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JKC