Analysis of interatomic Contacts of Structural Units in PDB entry:
9JKI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JKI entry

There is 1 chain in PDB entry 9JKI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 66VAL 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9JKI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 71Right-handed 310
Helix 2
AA2
A
72 77Right-handed alpha
Helix 3
AA3
A
84 94Right-handed alpha
Helix 4
AA4
A
110 125Right-handed alpha
Helix 5
AA5
A
131 135Right-handed 310
Helix 6
AA6
A
140 169Right-handed alpha
Helix 7
AA7
A
211 220Right-handed alpha
Helix 8
AA8
A
223 227Right-handed 310
Helix 9
AA9
A
274 286Right-handed alpha
Helix 10
AB1
A
289 294Right-handed alpha
Helix 11
AB2
A
308 323Right-handed alpha
Helix 12
AB3
A
327 332Right-handed alpha
Helix 13
AB4
A
341 352Right-handed alpha
Helix 14
AB5
A
353 368Right-handed alpha
Helix 15
AB6
A
389 399Right-handed alpha
Helix 16
AB7
A
405 438Right-handed alpha
Helix 17
AB8
A
439 444Right-handed alpha
Helix 18
AB9
A
444 462Right-handed alpha
Helix 19
AC1
A
463 465Right-handed 310
Helix 20
AC2
A
467 479Right-handed alpha
Helix 21
AC3
A
483 497Right-handed alpha
Helix 22
AC4
A
500 513Right-handed alpha
Helix 23
AC5
A
526 542Right-handed alpha
Helix 24
AC6
A
555 559Right-handed 310
Helix 25
AC7
A
561 569Right-handed alpha
Helix 26
AC8
A
571 579Right-handed alpha
Helix 27
AC9
A
597 601Right-handed 310
Helix 28
AD1
A
609 613Right-handed 310
Helix 29
AD2
A
615 619Right-handed 310
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There is 1 sheet (AA1) in PDB entry 9JKI.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 548first strand
Strand 2
A
551 552anti-parallel
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