Analysis of interatomic Contacts of Structural Units in PDB entry:
9JKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JKJ entry

There is 1 chain in PDB entry 9JKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 67VAL 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9JKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 78Right-handed alpha
Helix 2
AA2
A
79 84Right-handed alpha
Helix 3
AA3
A
84 93Right-handed alpha
Helix 4
AA4
A
95 109Right-handed alpha
Helix 5
AA5
A
110 125Right-handed alpha
Helix 6
AA6
A
135 138Right-handed 310
Helix 7
AA7
A
139 169Right-handed alpha
Helix 8
AA8
A
211 219Right-handed alpha
Helix 9
AA9
A
223 227Right-handed 310
Helix 10
AB1
A
237 253Right-handed alpha
Helix 11
AB2
A
271 286Right-handed alpha
Helix 12
AB3
A
290 298Right-handed alpha
Helix 13
AB4
A
301 305Right-handed 310
Helix 14
AB5
A
308 323Right-handed alpha
Helix 15
AB6
A
327 334Right-handed alpha
Helix 16
AB7
A
343 350Right-handed alpha
Helix 17
AB8
A
350 376Right-handed alpha
Helix 18
AB9
A
378 382Right-handed 310
Helix 19
AC1
A
389 400Right-handed alpha
Helix 20
AC2
A
405 419Right-handed alpha
Helix 21
AC3
A
419 439Right-handed alpha
Helix 22
AC4
A
440 443Right-handed 310
Helix 23
AC5
A
444 460Right-handed alpha
Helix 24
AC6
A
461 465Right-handed 310
Helix 25
AC7
A
467 479Right-handed alpha
Helix 26
AC8
A
481 497Right-handed alpha
Helix 27
AC9
A
500 513Right-handed alpha
Helix 28
AD1
A
517 526Right-handed alpha
Helix 29
AD2
A
526 542Right-handed alpha
Helix 30
AD3
A
554 570Right-handed alpha
Helix 31
AD4
A
570 582Right-handed alpha
Helix 32
AD5
A
586 596Right-handed alpha
Helix 33
AD6
A
597 599Right-handed 310
Helix 34
AD7
A
600 607Right-handed alpha
Helix 35
AD8
A
609 612Right-handed 310
Helix 36
AD9
A
613 618Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9JKJ.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 548first strand
Strand 2
A
551 552anti-parallel
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