Analysis of interatomic Contacts of Structural Units in PDB entry:
9JKK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JKK entry

There is 1 chain in PDB entry 9JKK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 66VAL 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9JKK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 74Right-handed alpha
Helix 2
AA2
A
84 93Right-handed alpha
Helix 3
AA3
A
98 110Right-handed alpha
Helix 4
AA4
A
110 119Right-handed alpha
Helix 5
AA5
A
119 125Right-handed alpha
Helix 6
AA6
A
135 138Right-handed 310
Helix 7
AA7
A
139 169Right-handed alpha
Helix 8
AA8
A
213 219Right-handed alpha
Helix 9
AA9
A
223 227Right-handed 310
Helix 10
AB1
A
239 256Right-handed alpha
Helix 11
AB2
A
267 272Right-handed alpha
Helix 12
AB3
A
272 285Right-handed alpha
Helix 13
AB4
A
289 296Right-handed alpha
Helix 14
AB5
A
308 323Right-handed alpha
Helix 15
AB6
A
332 336Right-handed 310
Helix 16
AB7
A
343 376Right-handed alpha
Helix 17
AB8
A
378 382Right-handed 310
Helix 18
AB9
A
389 399Right-handed alpha
Helix 19
AC1
A
403 438Right-handed alpha
Helix 20
AC2
A
439 443Right-handed 310
Helix 21
AC3
A
444 461Right-handed alpha
Helix 22
AC4
A
467 479Right-handed alpha
Helix 23
AC5
A
481 496Right-handed alpha
Helix 24
AC6
A
500 513Right-handed alpha
Helix 25
AC7
A
526 542Right-handed alpha
Helix 26
AC8
A
554 566Right-handed alpha
Helix 27
AC9
A
568 570Right-handed 310
Helix 28
AD1
A
571 579Right-handed alpha
Helix 29
AD2
A
590 596Right-handed alpha
Helix 30
AD3
A
600 605Right-handed alpha
Helix 31
AD4
A
609 613Right-handed 310
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There is 1 sheet (AA1) in PDB entry 9JKK.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 548first strand
Strand 2
A
551 552anti-parallel
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