Analysis of interatomic Contacts of Structural Units in PDB entry:
9JKL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JKL entry

There is 1 chain in PDB entry 9JKL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9JKL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 23Right-handed alpha
Helix 2
AA2
A
36 45Right-handed alpha
Helix 3
AA3
A
48 55Right-handed alpha
Helix 4
AA4
A
94 98Right-handed alpha
Helix 5
AA5
A
98 108Right-handed alpha
Helix 6
AA6
A
156 161Right-handed alpha
Helix 7
AA7
A
161 169Right-handed alpha
Helix 8
AA8
A
169 193Right-handed alpha
Helix 9
AA9
A
232 242Right-handed alpha
Helix 10
AB1
A
278 299Right-handed alpha
Helix 11
AB2
A
321 330Right-handed alpha
Helix 12
AB3
A
338 349Right-handed alpha
Helix 13
AB4
A
358 371Right-handed alpha
Helix 14
AB5
A
372 375Right-handed 310
Helix 15
AB6
A
385 389Right-handed 310
Helix 16
AB7
A
423 440Right-handed alpha
Helix 17
AB8
A
449 458Right-handed alpha
Helix 18
AB9
A
470 479Right-handed alpha
Helix 19
AC1
A
482 486Right-handed 310
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There are 4 sheets in PDB entry 9JKL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 71first strand
Strand 2
A
76 82anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
128 139parallel
Strand 5
A
113 122anti-parallel
Strand 6
A
60 71anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
246 254parallel
Strand 3
A
266 275anti-parallel
Strand 4
A
463 469anti-parallel
Strand 5
A
412 419anti-parallel
Strand 6
A
404 409anti-parallel
Strand 7
A
379 382anti-parallel
Strand 8
A
317 320parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
224 228anti-parallel
Strand 3
A
216 219anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
309 311anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il