Analysis of interatomic Contacts of Structural Units in PDB entry:
9JKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JKP entry

There is 1 chain in PDB entry 9JKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 2ASP 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9JKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
19 29Right-handed alpha
Helix 2
AA2
B
33 38Right-handed alpha
Helix 3
AA3
B
73 87Right-handed alpha
Helix 4
AA4
B
101 111Right-handed alpha
Helix 5
AA5
B
124 128Right-handed 310
Helix 6
AA6
B
129 131Right-handed 310
Helix 7
AA7
B
132 142Right-handed alpha
Helix 8
AA8
B
159 170Right-handed alpha
Helix 9
AA9
B
186 205Right-handed alpha
Helix 10
AB1
B
237 241Right-handed 310
Helix 11
AB2
B
246 248Right-handed 310
Helix 12
AB3
B
249 268Right-handed alpha
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There are 2 sheets in PDB entry 9JKP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 52first strand
Strand 2
B
55 60anti-parallel
Strand 3
B
6 13parallel
Strand 4
B
89 95parallel
Strand 5
B
118 123parallel
Strand 6
B
148 149parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 221first strand
Strand 2
B
226 235anti-parallel
Strand 3
B
270 280parallel
Strand 4
B
290 298anti-parallel
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