Analysis of interatomic Contacts of Structural Units in PDB entry:
9JL2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JL2 entry

There are 4 chains in PDB entry 9JL2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 C -9 G 18
D
 T 0 G 9
A
 ASP 2GLY 1366
B
 C 3 U 98
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 9JL2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 86Right-handed alpha
Helix 2
AA2
A
86 94Right-handed alpha
Helix 3
AA3
A
96 103Right-handed alpha
Helix 4
AA4
A
104 106Right-handed 310
Helix 5
AA5
A
121 132Right-handed alpha
Helix 6
AA6
A
134 144Right-handed alpha
Helix 7
AA7
A
150 164Right-handed alpha
Helix 8
AA8
A
180 194Right-handed alpha
Helix 9
AA9
A
210 214Right-handed 310
Helix 10
AB1
A
217 229Right-handed alpha
Helix 11
AB2
A
236 246Right-handed alpha
Helix 12
AB3
A
252 257Right-handed alpha
Helix 13
AB4
A
270 282Right-handed alpha
Helix 14
AB5
A
283 285Right-handed 310
Helix 15
AB6
A
286 306Right-handed alpha
Helix 16
AB7
A
315 342Right-handed alpha
Helix 17
AB8
A
346 352Right-handed alpha
Helix 18
AB9
A
358 364Right-handed alpha
Helix 19
AC1
A
368 381Right-handed alpha
Helix 20
AC2
A
386 394Right-handed alpha
Helix 21
AC3
A
406 410Right-handed 310
Helix 22
AC4
A
411 427Right-handed alpha
Helix 23
AC5
A
430 435Right-handed 310
Helix 24
AC6
A
436 446Right-handed alpha
Helix 25
AC7
A
477 482Right-handed alpha
Helix 26
AC8
A
483 494Right-handed alpha
Helix 27
AC9
A
512 522Right-handed alpha
Helix 28
AD1
A
523 526Right-handed 310
Helix 29
AD2
A
541 553Right-handed alpha
Helix 30
AD3
A
560 568Right-handed alpha
Helix 31
AD4
A
591 601Right-handed alpha
Helix 32
AD5
A
604 609Right-handed alpha
Helix 33
AD6
A
612 626Right-handed alpha
Helix 34
AD7
A
628 637Right-handed alpha
Helix 35
AD8
A
638 643Right-handed 310
Helix 36
AD9
A
644 654Right-handed alpha
Helix 37
AE1
A
663 669Right-handed alpha
Helix 38
AE2
A
678 684Right-handed alpha
Helix 39
AE3
A
692 697Right-handed alpha
Helix 40
AE4
A
703 715Right-handed alpha
Helix 41
AE5
A
721 726Right-handed alpha
Helix 42
AE6
A
734 749Right-handed alpha
Helix 43
AE7
A
927 939Right-handed alpha
Helix 44
AE8
A
961 970Right-handed alpha
Helix 45
AE9
A
980 999Right-handed alpha
Helix 46
AF1
A
1081 1087Right-handed alpha
Helix 47
AF2
A
1127 1132Right-handed alpha
Helix 48
AF3
A
1170 1177Right-handed alpha
Helix 49
AF4
A
1177 1185Right-handed alpha
Helix 50
AF5
A
1191 1195Right-handed 310
Helix 51
AF6
A
1207 1209Right-handed 310
Helix 52
AF7
A
1229 1241Right-handed alpha
Helix 53
AF8
A
1248 1262Right-handed alpha
Helix 54
AF9
A
1264 1280Right-handed alpha
Helix 55
AG1
A
1283 1297Right-handed alpha
Helix 56
AG2
A
1301 1310Right-handed alpha
Helix 57
AG3
A
1311 1315Right-handed 310
Helix 58
AG4
A
1339 1344Right-handed alpha
Helix 59
AG5
A
1363 1365Right-handed 310
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There are 8 sheets in PDB entry 9JL2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
15 21anti-parallel
Strand 3
A
49 52anti-parallel
Strand 4
A
1093 1096parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
45 46anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
1357 1361parallel
Strand 3
A
1346 1350anti-parallel
Strand 4
A
1203 1206anti-parallel
Strand 5
A
1210 1213anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
528 530anti-parallel
Strand 3
A
579 581anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
759 760first strand
Strand 2
A
955 956parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1163first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1166 1167anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1163first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1196 1199anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1326first strand
Strand 2
A
1329 1331anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il