Analysis of interatomic Contacts of Structural Units in PDB entry:
9JL4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JL4 entry

There is 1 chain in PDB entry 9JL4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4SER 1363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9JL4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 64Right-handed alpha
Helix 2
AA2
A
69 94Right-handed alpha
Helix 3
AA3
A
96 101Right-handed alpha
Helix 4
AA4
A
121 132Right-handed alpha
Helix 5
AA5
A
139 145Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
175 180Right-handed alpha
Helix 8
AA8
A
180 194Right-handed alpha
Helix 9
AA9
A
217 228Right-handed alpha
Helix 10
AB1
A
236 247Right-handed alpha
Helix 11
AB2
A
252 257Right-handed alpha
Helix 12
AB3
A
270 283Right-handed alpha
Helix 13
AB4
A
286 307Right-handed alpha
Helix 14
AB5
A
315 343Right-handed alpha
Helix 15
AB6
A
343 352Right-handed alpha
Helix 16
AB7
A
358 364Right-handed alpha
Helix 17
AB8
A
368 376Right-handed alpha
Helix 18
AB9
A
411 427Right-handed alpha
Helix 19
AC1
A
430 436Right-handed alpha
Helix 20
AC2
A
436 446Right-handed alpha
Helix 21
AC3
A
719 727Right-handed alpha
Helix 22
AC4
A
730 751Right-handed alpha
Helix 23
AC5
A
776 791Right-handed alpha
Helix 24
AC6
A
873 878Right-handed alpha
Helix 25
AC7
A
879 889Right-handed alpha
Helix 26
AC8
A
893 902Right-handed alpha
Helix 27
AC9
A
910 922Right-handed alpha
Helix 28
AD1
A
925 940Right-handed alpha
Helix 29
AD2
A
960 970Right-handed alpha
Helix 30
AD3
A
980 1001Right-handed alpha
Helix 31
AD4
A
1004 1009Right-handed alpha
Helix 32
AD5
A
1017 1022Right-handed alpha
Helix 33
AD6
A
1043 1047Right-handed 310
Helix 34
AD7
A
1076 1088Right-handed alpha
Helix 35
AD8
A
1168 1177Right-handed alpha
Helix 36
AD9
A
1177 1186Right-handed alpha
Helix 37
AE1
A
1229 1241Right-handed alpha
Helix 38
AE2
A
1259 1262Right-handed 310
Helix 39
AE3
A
1263 1280Right-handed alpha
Helix 40
AE4
A
1283 1297Right-handed alpha
Helix 41
AE5
A
1301 1313Right-handed alpha
Helix 42
AE6
A
1314 1316Right-handed 310
Helix 43
AE7
A
1340 1345Right-handed alpha
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There are 7 sheets in PDB entry 9JL4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
42 52anti-parallel
Strand 3
A
15 21anti-parallel
Strand 4
A
6 8anti-parallel
Strand 5
A
759 760parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
42 52anti-parallel
Strand 3
A
1092 1096parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
839 840first strand
Strand 2
A
855 856anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1051first strand
Strand 2
A
1057 1059anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1065first strand
Strand 2
A
1072 1075anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1139 1145first strand
Strand 2
A
1162 1167anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1219 1222first strand
Strand 2
A
1210 1216anti-parallel
Strand 3
A
1203 1206anti-parallel
Strand 4
A
1346 1349anti-parallel
Strand 5
A
1358 1361anti-parallel
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