Analysis of interatomic Contacts of Structural Units in PDB entry:
9JL6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JL6 entry

There are 2 chains in PDB entry 9JL6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 14ASN 395
B
 ARG 14ASN 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9JL6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 50Right-handed alpha
Helix 2
AA2
A
56 68Right-handed alpha
Helix 3
AA3
A
79 86Right-handed alpha
Helix 4
AA4
A
96 105Right-handed alpha
Helix 5
AA5
A
106 124Right-handed alpha
Helix 6
AA6
A
126 130Right-handed 310
Helix 7
AA7
A
145 154Right-handed alpha
Helix 8
AA8
A
171 185Right-handed alpha
Helix 9
AA9
A
211 221Right-handed alpha
Helix 10
AB1
A
276 293Right-handed alpha
Helix 11
AB2
A
312 324Right-handed alpha
Helix 12
AB3
A
326 329Right-handed 310
Helix 13
AB4
A
330 341Right-handed alpha
Helix 14
AB5
A
344 362Right-handed alpha
Helix 15
AB6
A
381 383Right-handed 310
Helix 16
AB7
B
41 50Right-handed alpha
Helix 17
AB8
B
55 69Right-handed alpha
Helix 18
AB9
B
80 86Right-handed alpha
Helix 19
AC1
B
87 91Right-handed 310
Helix 20
AC2
B
96 124Right-handed alpha
Helix 21
AC3
B
126 130Right-handed 310
Helix 22
AC4
B
145 155Right-handed alpha
Helix 23
AC5
B
171 187Right-handed alpha
Helix 24
AC6
B
211 221Right-handed alpha
Helix 25
AC7
B
276 285Right-handed alpha
Helix 26
AC8
B
285 293Right-handed alpha
Helix 27
AC9
B
300 302Right-handed 310
Helix 28
AD1
B
312 324Right-handed alpha
Helix 29
AD2
B
326 329Right-handed 310
Helix 30
AD3
B
330 340Right-handed alpha
Helix 31
AD4
B
344 363Right-handed alpha
Helix 32
AD5
B
381 383Right-handed 310
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There are 8 sheets in PDB entry 9JL6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 31first strand
Strand 2
A
225 231anti-parallel
Strand 3
A
192 195anti-parallel
Strand 4
A
132 137parallel
Strand 5
A
161 166parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
73 74anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 245first strand
Strand 2
A
385 392anti-parallel
Strand 3
A
373 379anti-parallel
Strand 4
A
304 308parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 265first strand
Strand 2
A
268 273anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 31first strand
Strand 2
B
225 231anti-parallel
Strand 3
B
192 195anti-parallel
Strand 4
B
132 137parallel
Strand 5
B
161 166parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
73 75anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 245first strand
Strand 2
B
385 392anti-parallel
Strand 3
B
373 379anti-parallel
Strand 4
B
304 308parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 265first strand
Strand 2
B
268 273anti-parallel
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