Analysis of interatomic Contacts of Structural Units in PDB entry:
9JLF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JLF entry

There are 8 chains in PDB entry 9JLF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	THR 132
E	MET 1	SER 219
a	ALA 46	ASN 419
A	ALA 46	ASN 419
F	MET 1	SER 219
b	ILE 4	ARG 136
B	ILE 4	ARG 136
C	MET 1	VAL 121

There are 48 helices in PDB entry 9JLF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	2	18	Right-handed alpha
Helix 2	AA2	D	76	90	Right-handed alpha
Helix 3	AA3	E	150	162	Right-handed alpha
Helix 4	AA4	E	215	219	Right-handed alpha
Helix 5	AA5	a	49	57	Right-handed alpha
Helix 6	AA6	a	58	73	Right-handed alpha
Helix 7	AA7	a	84	95	Right-handed alpha
Helix 8	AA8	a	96	111	Right-handed alpha
Helix 9	AA9	a	182	184	Right-handed 310
Helix 10	AB1	a	193	200	Right-handed alpha
Helix 11	AB2	a	209	232	Right-handed alpha
Helix 12	AB3	a	250	266	Right-handed alpha
Helix 13	AB4	a	291	308	Right-handed alpha
Helix 14	AB5	a	310	315	Right-handed alpha
Helix 15	AB6	a	325	357	Right-handed alpha
Helix 16	AB7	a	373	391	Right-handed alpha
Helix 17	AB8	a	398	410	Right-handed alpha
Helix 18	AB9	A	51	57	Right-handed alpha
Helix 19	AC1	A	57	73	Right-handed alpha
Helix 20	AC2	A	84	95	Right-handed alpha
Helix 21	AC3	A	96	111	Right-handed alpha
Helix 22	AC4	A	142	144	Right-handed 310
Helix 23	AC5	A	193	200	Right-handed alpha
Helix 24	AC6	A	209	232	Right-handed alpha
Helix 25	AC7	A	250	266	Right-handed alpha
Helix 26	AC8	A	291	308	Right-handed alpha
Helix 27	AC9	A	310	315	Right-handed alpha
Helix 28	AD1	A	325	353	Right-handed alpha
Helix 29	AD2	A	354	356	Right-handed 310
Helix 30	AD3	A	373	389	Right-handed alpha
Helix 31	AD4	A	399	410	Right-handed alpha
Helix 32	AD5	F	151	162	Right-handed alpha
Helix 33	AD6	F	215	219	Right-handed alpha
Helix 34	AD7	b	6	21	Right-handed alpha
Helix 35	AD8	b	22	27	Right-handed 310
Helix 36	AD9	b	28	41	Right-handed alpha
Helix 37	AE1	b	48	50	Right-handed 310
Helix 38	AE2	b	51	65	Right-handed alpha
Helix 39	AE3	b	112	126	Right-handed alpha
Helix 40	AE4	B	6	21	Right-handed alpha
Helix 41	AE5	B	22	26	Right-handed 310
Helix 42	AE6	B	28	40	Right-handed alpha
Helix 43	AE7	B	41	43	Right-handed 310
Helix 44	AE8	B	44	49	Right-handed alpha
Helix 45	AE9	B	51	64	Right-handed alpha
Helix 46	AF1	B	77	80	Right-handed 310
Helix 47	AF2	B	112	126	Right-handed alpha
Helix 48	AF3	C	2	17	Right-handed alpha

There are 19 sheets in PDB entry 9JLF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	38	50	parallel
Strand 3	D	57	70	anti-parallel
Strand 4	D	117	130	anti-parallel
Strand 5	D	100	107	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	214	first strand
Strand 2	E	176	182	anti-parallel
Strand 3	E	165	171	anti-parallel
Strand 4	E	8	15	anti-parallel
Strand 5	E	90	100	anti-parallel
Strand 6	E	45	51	anti-parallel
Strand 7	E	60	66	anti-parallel
Strand 8	E	70	74	anti-parallel
Strand 9	E	31	34	anti-parallel
Strand 10	E	19	24	anti-parallel
Strand 11	E	90	100	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	110	first strand
Strand 2	E	138	144	anti-parallel
Strand 3	E	199	205	anti-parallel
Strand 4	E	184	187	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	119	first strand
Strand 2	E	128	134	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	77	79	first strand
Strand 2	a	363	365	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	137	142	first strand
Strand 2	a	112	118	anti-parallel
Strand 3	a	185	188	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	146	150	first strand
Strand 2	a	165	168	anti-parallel
Strand 3	a	177	180	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	281	286	first strand
Strand 2	a	234	240	anti-parallel
Strand 3	A	272	276	parallel
Strand 4	b	132	133	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	363	366	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	141	first strand
Strand 2	A	112	118	anti-parallel
Strand 3	A	185	188	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	151	first strand
Strand 2	A	163	168	anti-parallel
Strand 3	A	177	180	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	240	first strand
Strand 2	A	280	286	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	100	first strand
Strand 2	F	8	11	anti-parallel
Strand 3	F	165	171	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	F	211	214	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	24	first strand
Strand 2	F	31	34	anti-parallel
Strand 3	F	70	74	anti-parallel
Strand 4	F	60	66	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	88	92	anti-parallel
Strand 7	F	19	24	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	111	first strand
Strand 2	F	137	144	anti-parallel
Strand 3	F	199	204	anti-parallel
Strand 4	F	184	186	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	119	first strand
Strand 2	F	128	131	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	86	88	first strand
Strand 2	b	94	99	anti-parallel
Strand 3	B	82	89	anti-parallel
Strand 4	B	93	96	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	49	first strand
Strand 2	C	24	27	anti-parallel
Strand 3	C	87	90	anti-parallel
Strand 4	C	93	99	anti-parallel
Strand 5	C	115	118	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	60	first strand
Strand 2	C	69	75	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JLF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JLF