Analysis of interatomic Contacts of Structural Units in PDB entry:
9JLI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JLI entry

There are 3 chains in PDB entry 9JLI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 25	THR 633
B	ASP 25	THR 633
C	ASP 25	THR 633

There are 39 helices in PDB entry 9JLI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	108	Right-handed 310
Helix 2	AA2	A	118	129	Right-handed alpha
Helix 3	AA3	A	150	152	Right-handed 310
Helix 4	AA4	A	164	167	Right-handed 310
Helix 5	AA5	A	238	240	Right-handed 310
Helix 6	AA6	A	256	260	Right-handed 310
Helix 7	AA7	A	335	337	Right-handed 310
Helix 8	AA8	A	338	353	Right-handed alpha
Helix 9	AA9	A	410	453	Right-handed alpha
Helix 10	AB1	A	455	465	Right-handed alpha
Helix 11	AB2	A	575	579	Right-handed 310
Helix 12	AB3	A	605	612	Right-handed alpha
Helix 13	AB4	A	616	631	Right-handed alpha
Helix 14	AB5	B	104	108	Right-handed 310
Helix 15	AB6	B	118	129	Right-handed alpha
Helix 16	AB7	B	150	152	Right-handed 310
Helix 17	AB8	B	164	167	Right-handed 310
Helix 18	AB9	B	238	240	Right-handed 310
Helix 19	AC1	B	256	260	Right-handed 310
Helix 20	AC2	B	335	337	Right-handed 310
Helix 21	AC3	B	338	353	Right-handed alpha
Helix 22	AC4	B	410	453	Right-handed alpha
Helix 23	AC5	B	455	465	Right-handed alpha
Helix 24	AC6	B	575	579	Right-handed 310
Helix 25	AC7	B	605	612	Right-handed alpha
Helix 26	AC8	B	616	631	Right-handed alpha
Helix 27	AC9	C	104	108	Right-handed 310
Helix 28	AD1	C	118	129	Right-handed alpha
Helix 29	AD2	C	150	152	Right-handed 310
Helix 30	AD3	C	164	167	Right-handed 310
Helix 31	AD4	C	238	240	Right-handed 310
Helix 32	AD5	C	256	260	Right-handed 310
Helix 33	AD6	C	335	337	Right-handed 310
Helix 34	AD7	C	338	353	Right-handed alpha
Helix 35	AD8	C	410	453	Right-handed alpha
Helix 36	AD9	C	455	465	Right-handed alpha
Helix 37	AE1	C	575	579	Right-handed 310
Helix 38	AE2	C	605	612	Right-handed alpha
Helix 39	AE3	C	616	631	Right-handed alpha

There are 27 sheets in PDB entry 9JLI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	491	493	anti-parallel
Strand 3	A	515	518	anti-parallel
Strand 4	A	528	532	anti-parallel
Strand 5	A	537	539	anti-parallel
Strand 6	A	39	40	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	478	first strand
Strand 2	A	49	52	anti-parallel
Strand 3	C	581	582	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	360	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	365	369	anti-parallel
Strand 4	A	319	324	anti-parallel
Strand 5	A	309	314	anti-parallel
Strand 6	A	292	305	anti-parallel
Strand 7	A	66	77	anti-parallel
Strand 8	A	373	381	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	84	93	anti-parallel
Strand 3	A	195	205	anti-parallel
Strand 4	A	213	215	anti-parallel
Strand 5	A	220	221	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	172	174	anti-parallel
Strand 3	A	195	205	anti-parallel
Strand 4	A	84	93	anti-parallel
Strand 5	A	276	281	anti-parallel
Strand 6	A	262	273	anti-parallel
Strand 7	A	242	251	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	157	159	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	144	148	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	499	first strand
Strand 2	A	505	511	anti-parallel
Strand 3	A	545	546	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	558	first strand
Strand 2	A	561	566	anti-parallel
Strand 3	A	569	574	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	582	first strand
Strand 2	B	49	52	parallel
Strand 3	B	477	478	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	491	493	anti-parallel
Strand 3	B	515	518	anti-parallel
Strand 4	B	528	532	anti-parallel
Strand 5	B	537	539	anti-parallel
Strand 6	B	39	40	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	373	381	anti-parallel
Strand 3	B	365	369	anti-parallel
Strand 4	B	319	324	anti-parallel
Strand 5	B	309	314	anti-parallel
Strand 6	B	292	305	anti-parallel
Strand 7	B	66	77	anti-parallel
Strand 8	B	373	381	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	84	93	anti-parallel
Strand 3	B	195	205	anti-parallel
Strand 4	B	213	215	anti-parallel
Strand 5	B	220	221	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	B	172	174	anti-parallel
Strand 3	B	195	205	anti-parallel
Strand 4	B	84	93	anti-parallel
Strand 5	B	276	281	anti-parallel
Strand 6	B	262	273	anti-parallel
Strand 7	B	242	251	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	132	first strand
Strand 2	B	157	159	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	144	148	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	499	first strand
Strand 2	B	505	511	anti-parallel
Strand 3	B	545	546	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	558	first strand
Strand 2	B	561	566	anti-parallel
Strand 3	B	569	574	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	581	582	first strand
Strand 2	C	49	52	parallel
Strand 3	C	477	478	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	491	493	anti-parallel
Strand 3	C	515	518	anti-parallel
Strand 4	C	528	532	anti-parallel
Strand 5	C	537	539	anti-parallel
Strand 6	C	39	40	parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	360	first strand
Strand 2	C	373	381	anti-parallel
Strand 3	C	365	369	anti-parallel
Strand 4	C	319	324	anti-parallel
Strand 5	C	309	314	anti-parallel
Strand 6	C	292	305	anti-parallel
Strand 7	C	66	77	anti-parallel
Strand 8	C	373	381	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	116	first strand
Strand 2	C	84	93	anti-parallel
Strand 3	C	195	205	anti-parallel
Strand 4	C	213	215	anti-parallel
Strand 5	C	220	221	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	172	174	anti-parallel
Strand 3	C	195	205	anti-parallel
Strand 4	C	84	93	anti-parallel
Strand 5	C	276	281	anti-parallel
Strand 6	C	262	273	anti-parallel
Strand 7	C	242	251	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	132	first strand
Strand 2	C	157	159	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	144	148	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	499	first strand
Strand 2	C	505	511	anti-parallel
Strand 3	C	545	546	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	553	558	first strand
Strand 2	C	561	566	anti-parallel
Strand 3	C	569	574	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JLI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JLI