Analysis of interatomic Contacts of Structural Units in PDB entry:
9JLO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JLO entry

There are 2 chains in PDB entry 9JLO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 316
B
 LYS 3GLN 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9JLO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 28Right-handed alpha
Helix 2
AA2
A
39 52Right-handed alpha
Helix 3
AA3
A
53 56Right-handed 310
Helix 4
AA4
A
66 73Right-handed 310
Helix 5
AA5
A
89 111Right-handed alpha
Helix 6
AA6
A
123 136Right-handed alpha
Helix 7
AA7
A
138 140Right-handed 310
Helix 8
AA8
A
147 163Right-handed alpha
Helix 9
AA9
A
165 167Right-handed 310
Helix 10
AB1
A
195 202Right-handed alpha
Helix 11
AB2
A
205 228Right-handed alpha
Helix 12
AB3
A
231 247Right-handed alpha
Helix 13
AB4
A
262 264Right-handed 310
Helix 14
AB5
A
290 316Right-handed alpha
Helix 15
AB6
B
14 28Right-handed alpha
Helix 16
AB7
B
39 52Right-handed alpha
Helix 17
AB8
B
53 56Right-handed 310
Helix 18
AB9
B
66 73Right-handed 310
Helix 19
AC1
B
89 111Right-handed alpha
Helix 20
AC2
B
123 136Right-handed alpha
Helix 21
AC3
B
138 140Right-handed 310
Helix 22
AC4
B
147 163Right-handed alpha
Helix 23
AC5
B
165 167Right-handed 310
Helix 24
AC6
B
195 202Right-handed alpha
Helix 25
AC7
B
205 228Right-handed alpha
Helix 26
AC8
B
231 247Right-handed alpha
Helix 27
AC9
B
262 264Right-handed 310
Helix 28
AD1
B
290 316Right-handed alpha
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There are 8 sheets in PDB entry 9JLO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
32 36parallel
Strand 3
A
7 11parallel
Strand 4
A
75 78parallel
Strand 5
A
116 119parallel
Strand 6
A
142 144parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
189 190anti-parallel
Strand 3
A
193 194anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
182 183anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 260first strand
Strand 2
A
266 277anti-parallel
Strand 3
A
280 284anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
32 36parallel
Strand 3
B
7 11parallel
Strand 4
B
75 78parallel
Strand 5
B
116 119parallel
Strand 6
B
142 144parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
189 190anti-parallel
Strand 3
B
193 194anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
182 183anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 260first strand
Strand 2
B
266 277anti-parallel
Strand 3
B
280 284anti-parallel
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