Analysis of interatomic Contacts of Structural Units in PDB entry:
9JLP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JLP entry

There are 5 chains in PDB entry 9JLP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 800
C
 GLN 92ILE 143
D
 LEU 93LYS 140
E
 VAL 89ILE 143
F
 VAL 89ILE 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9JLP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
13 16Right-handed 310
Helix 3
AA3
A
17 23Right-handed alpha
Helix 4
AA4
A
62 77Right-handed alpha
Helix 5
AA5
A
82 100Right-handed alpha
Helix 6
AA6
A
101 112Right-handed alpha
Helix 7
AA7
A
129 134Right-handed alpha
Helix 8
AA8
A
135 137Right-handed 310
Helix 9
AA9
A
138 144Right-handed alpha
Helix 10
AB1
A
150 168Right-handed alpha
Helix 11
AB2
A
190 211Right-handed alpha
Helix 12
AB3
A
215 223Right-handed alpha
Helix 13
AB4
A
231 247Right-handed alpha
Helix 14
AB5
A
255 270Right-handed alpha
Helix 15
AB6
A
288 294Right-handed alpha
Helix 16
AB7
A
296 309Right-handed alpha
Helix 17
AB8
A
321 338Right-handed alpha
Helix 18
AB9
A
345 349Right-handed alpha
Helix 19
AC1
A
399 418Right-handed alpha
Helix 20
AC2
A
420 433Right-handed alpha
Helix 21
AC3
A
464 474Right-handed alpha
Helix 22
AC4
A
486 491Right-handed alpha
Helix 23
AC5
A
492 515Right-handed alpha
Helix 24
AC6
A
581 586Right-handed alpha
Helix 25
AC7
A
643 647Right-handed alpha
Helix 26
AC8
A
661 690Right-handed alpha
Helix 27
AC9
A
694 718Right-handed alpha
Helix 28
AD1
A
719 742Right-handed alpha
Helix 29
AD2
A
744 750Right-handed 310
Helix 30
AD3
A
751 770Right-handed alpha
Helix 31
AD4
A
774 788Right-handed alpha
Helix 32
AD5
A
789 796Right-handed alpha
Helix 33
AD6
C
93 111Right-handed alpha
Helix 34
AD7
C
112 114Right-handed 310
Helix 35
AD8
C
115 125Right-handed alpha
Helix 36
AD9
C
128 143Right-handed alpha
Helix 37
AE1
D
94 110Right-handed alpha
Helix 38
AE2
D
118 125Right-handed alpha
Helix 39
AE3
D
130 140Right-handed alpha
Helix 40
AE4
E
90 111Right-handed alpha
Helix 41
AE5
E
112 124Right-handed alpha
Helix 42
AE6
E
126 143Right-handed alpha
Helix 43
AE7
F
90 110Right-handed alpha
Helix 44
AE8
F
115 126Right-handed alpha
Helix 45
AE9
F
128 143Right-handed alpha
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There are 5 sheets in PDB entry 9JLP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
343 344anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
178 180anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
368 370anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 382first strand
Strand 2
A
657 659anti-parallel
Strand 3
A
620 621anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 629first strand
Strand 2
A
638 642anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il