Analysis of interatomic Contacts of Structural Units in PDB entry:
9JLS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JLS entry

There are 3 chains in PDB entry 9JLS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 477
B	MET 1	GLU 477
C	MET 1	PHE 222

There are116 helices in PDB entry 9JLS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	37	Right-handed alpha
Helix 2	AA2	A	39	44	Right-handed alpha
Helix 3	AA3	A	45	47	Right-handed 310
Helix 4	AA4	A	57	69	Right-handed alpha
Helix 5	AA5	A	75	82	Right-handed alpha
Helix 6	AA6	A	88	103	Right-handed alpha
Helix 7	AA7	A	105	109	Right-handed 310
Helix 8	AA8	A	110	119	Right-handed alpha
Helix 9	AA9	A	123	138	Right-handed alpha
Helix 10	AB1	A	140	147	Right-handed alpha
Helix 11	AB2	A	147	154	Right-handed alpha
Helix 12	AB3	A	158	186	Right-handed alpha
Helix 13	AB4	A	200	206	Right-handed alpha
Helix 14	AB5	A	207	213	Right-handed 310
Helix 15	AB6	A	226	246	Right-handed alpha
Helix 16	AB7	A	254	258	Right-handed 310
Helix 17	AB8	A	260	270	Right-handed alpha
Helix 18	AB9	A	278	286	Right-handed alpha
Helix 19	AC1	A	307	317	Right-handed alpha
Helix 20	AC2	A	318	321	Right-handed 310
Helix 21	AC3	A	322	341	Right-handed alpha
Helix 22	AC4	A	356	363	Right-handed 310
Helix 23	AC5	A	364	378	Right-handed alpha
Helix 24	AC6	A	385	392	Right-handed alpha
Helix 25	AC7	A	419	435	Right-handed alpha
Helix 26	AC8	A	439	444	Right-handed alpha
Helix 27	AC9	A	446	452	Right-handed alpha
Helix 28	AD1	A	460	476	Right-handed alpha
Helix 29	AD2	B	28	37	Right-handed alpha
Helix 30	AD3	B	39	44	Right-handed alpha
Helix 31	AD4	B	45	47	Right-handed 310
Helix 32	AD5	B	57	69	Right-handed alpha
Helix 33	AD6	B	75	82	Right-handed alpha
Helix 34	AD7	B	83	87	Right-handed 310
Helix 35	AD8	B	88	102	Right-handed alpha
Helix 36	AD9	B	105	109	Right-handed 310
Helix 37	AE1	B	110	119	Right-handed alpha
Helix 38	AE2	B	123	138	Right-handed alpha
Helix 39	AE3	B	140	147	Right-handed alpha
Helix 40	AE4	B	147	154	Right-handed alpha
Helix 41	AE5	B	158	175	Right-handed alpha
Helix 42	AE6	B	175	186	Right-handed alpha
Helix 43	AE7	B	200	206	Right-handed alpha
Helix 44	AE8	B	207	212	Right-handed 310
Helix 45	AE9	B	226	246	Right-handed alpha
Helix 46	AF1	B	254	258	Right-handed 310
Helix 47	AF2	B	260	270	Right-handed alpha
Helix 48	AF3	B	279	286	Right-handed alpha
Helix 49	AF4	B	307	317	Right-handed alpha
Helix 50	AF5	B	318	321	Right-handed 310
Helix 51	AF6	B	322	341	Right-handed alpha
Helix 52	AF7	B	355	363	Right-handed 310
Helix 53	AF8	B	364	378	Right-handed alpha
Helix 54	AF9	B	385	392	Right-handed alpha
Helix 55	AG1	B	419	436	Right-handed alpha
Helix 56	AG2	B	439	445	Right-handed alpha
Helix 57	AG3	B	446	452	Right-handed alpha
Helix 58	AG4	B	460	476	Right-handed alpha
Helix 59	AG5	C	28	37	Right-handed alpha
Helix 60	AG6	C	39	44	Right-handed alpha
Helix 61	AG7	C	45	47	Right-handed 310
Helix 62	AG8	C	57	69	Right-handed alpha
Helix 63	AG9	C	74	82	Right-handed alpha
Helix 64	AH1	C	83	87	Right-handed 310
Helix 65	AH2	C	88	102	Right-handed alpha
Helix 66	AH3	C	105	109	Right-handed 310
Helix 67	AH4	C	110	119	Right-handed alpha
Helix 68	AH5	C	123	138	Right-handed alpha
Helix 69	AH6	C	140	147	Right-handed alpha
Helix 70	AH7	C	147	154	Right-handed alpha
Helix 71	AH8	C	158	175	Right-handed alpha
Helix 72	AH9	C	175	186	Right-handed alpha
Helix 73	AI1	C	200	206	Right-handed alpha
Helix 74	AI2	C	207	213	Right-handed 310
Helix 75	AI3	C	226	246	Right-handed alpha
Helix 76	AI4	C	254	258	Right-handed 310
Helix 77	AI5	C	260	270	Right-handed alpha
Helix 78	AI6	C	279	286	Right-handed alpha
Helix 79	AI7	C	307	317	Right-handed alpha
Helix 80	AI8	C	322	341	Right-handed alpha
Helix 81	AI9	C	356	363	Right-handed 310
Helix 82	AJ1	C	364	378	Right-handed alpha
Helix 83	AJ2	C	385	392	Right-handed alpha
Helix 84	AJ3	C	419	436	Right-handed alpha
Helix 85	AJ4	C	439	445	Right-handed alpha
Helix 86	AJ5	C	446	452	Right-handed alpha
Helix 87	AJ6	C	460	476	Right-handed alpha
Helix 88	AJ7	D	28	37	Right-handed alpha
Helix 89	AJ8	D	39	44	Right-handed alpha
Helix 90	AJ9	D	45	47	Right-handed 310
Helix 91	AK1	D	57	69	Right-handed alpha
Helix 92	AK2	D	75	82	Right-handed alpha
Helix 93	AK3	D	83	87	Right-handed 310
Helix 94	AK4	D	88	102	Right-handed alpha
Helix 95	AK5	D	105	109	Right-handed 310
Helix 96	AK6	D	110	119	Right-handed alpha
Helix 97	AK7	D	123	138	Right-handed alpha
Helix 98	AK8	D	140	147	Right-handed alpha
Helix 99	AK9	D	147	154	Right-handed alpha
Helix 100	AL1	D	158	175	Right-handed alpha
Helix 101	AL2	D	175	186	Right-handed alpha
Helix 102	AL3	D	200	206	Right-handed alpha
Helix 103	AL4	D	207	212	Right-handed 310
Helix 104	AL5	D	226	246	Right-handed alpha
Helix 105	AL6	D	254	258	Right-handed 310
Helix 106	AL7	D	260	270	Right-handed alpha
Helix 107	AL8	D	278	286	Right-handed alpha
Helix 108	AL9	D	307	317	Right-handed alpha
Helix 109	AM1	D	322	341	Right-handed alpha
Helix 110	AM2	D	356	363	Right-handed 310
Helix 111	AM3	D	364	378	Right-handed alpha
Helix 112	AM4	D	385	392	Right-handed alpha
Helix 113	AM5	D	419	435	Right-handed alpha
Helix 114	AM6	D	439	444	Right-handed alpha
Helix 115	AM7	D	446	452	Right-handed alpha
Helix 116	AM8	D	460	476	Right-handed alpha

There are 15 sheets in PDB entry 9JLS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	53	56	parallel
Strand 3	A	4	12	parallel
Strand 4	A	346	352	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	53	56	parallel
Strand 3	A	4	12	parallel
Strand 4	A	381	383	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	A	73	74	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	277	first strand
Strand 2	A	301	305	parallel
Strand 3	A	294	297	anti-parallel
Strand 4	A	397	400	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	52	56	parallel
Strand 3	B	4	12	parallel
Strand 4	B	346	352	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	52	56	parallel
Strand 3	B	4	12	parallel
Strand 4	B	381	383	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	B	73	74	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	274	278	parallel
Strand 3	B	301	306	parallel
Strand 4	B	294	297	anti-parallel
Strand 5	B	397	400	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	52	56	parallel
Strand 3	C	4	12	parallel
Strand 4	C	346	352	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	52	56	parallel
Strand 3	C	4	12	parallel
Strand 4	C	381	383	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	278	first strand
Strand 2	C	301	306	parallel
Strand 3	C	294	297	anti-parallel
Strand 4	C	397	400	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	53	56	parallel
Strand 3	D	4	12	parallel
Strand 4	D	346	352	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	53	56	parallel
Strand 3	D	4	12	parallel
Strand 4	D	381	384	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	25	first strand
Strand 2	D	73	74	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	277	first strand
Strand 2	D	301	305	parallel
Strand 3	D	294	297	anti-parallel
Strand 4	D	397	400	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JLS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JLS