Analysis of interatomic Contacts of Structural Units in PDB entry:
9JM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JM0 entry

There are 20 chains in PDB entry 9JM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	ASN 316
C	MET 1	HIS 306
D	G 1	G 85
E	C 8	C 81
F	C 0	G 7
B	SER 3	ASN 316
G	G 1	G 85
H	C 8	C 81
I	C 0	G 7
J	MET 1	HIS 306
K	SER 3	ASN 316
L	MET 1	HIS 306
M	G 1	G 85
N	C 8	C 81
O	C 0	G 7
P	SER 3	ASN 316
Q	G 1	G 85
R	C 8	C 81
S	C 0	G 7
T	MET 1	HIS 306

There are119 helices in PDB entry 9JM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	22	31	Right-handed alpha
Helix 3	AA3	A	33	43	Right-handed alpha
Helix 4	AA4	A	44	46	Right-handed 310
Helix 5	AA5	A	69	83	Right-handed alpha
Helix 6	AA6	A	84	87	Right-handed 310
Helix 7	AA7	A	101	107	Right-handed alpha
Helix 8	AA8	A	108	110	Right-handed 310
Helix 9	AA9	A	123	127	Right-handed 310
Helix 10	AB1	A	128	138	Right-handed alpha
Helix 11	AB2	A	142	154	Right-handed alpha
Helix 12	AB3	A	165	174	Right-handed alpha
Helix 13	AB4	A	174	187	Right-handed alpha
Helix 14	AB5	A	205	220	Right-handed alpha
Helix 15	AB6	A	221	224	Right-handed 310
Helix 16	AB7	A	257	272	Right-handed alpha
Helix 17	AB8	A	277	292	Right-handed alpha
Helix 18	AB9	A	292	311	Right-handed alpha
Helix 19	AC1	C	6	18	Right-handed alpha
Helix 20	AC2	C	205	213	Right-handed alpha
Helix 21	AC3	C	217	230	Right-handed alpha
Helix 22	AC4	C	235	250	Right-handed alpha
Helix 23	AC5	C	263	274	Right-handed alpha
Helix 24	AC6	C	275	292	Right-handed alpha
Helix 25	AC7	B	4	14	Right-handed alpha
Helix 26	AC8	B	22	31	Right-handed alpha
Helix 27	AC9	B	33	43	Right-handed alpha
Helix 28	AD1	B	44	46	Right-handed 310
Helix 29	AD2	B	69	83	Right-handed alpha
Helix 30	AD3	B	84	87	Right-handed 310
Helix 31	AD4	B	101	107	Right-handed alpha
Helix 32	AD5	B	108	110	Right-handed 310
Helix 33	AD6	B	122	127	Right-handed alpha
Helix 34	AD7	B	128	139	Right-handed alpha
Helix 35	AD8	B	142	154	Right-handed alpha
Helix 36	AD9	B	165	174	Right-handed alpha
Helix 37	AE1	B	174	188	Right-handed alpha
Helix 38	AE2	B	205	220	Right-handed alpha
Helix 39	AE3	B	221	224	Right-handed 310
Helix 40	AE4	B	255	272	Right-handed alpha
Helix 41	AE5	B	277	292	Right-handed alpha
Helix 42	AE6	B	292	311	Right-handed alpha
Helix 43	AE7	J	6	14	Right-handed alpha
Helix 44	AE8	J	44	56	Right-handed alpha
Helix 45	AE9	J	67	74	Right-handed alpha
Helix 46	AF1	J	79	89	Right-handed alpha
Helix 47	AF2	J	100	113	Right-handed alpha
Helix 48	AF3	J	113	118	Right-handed alpha
Helix 49	AF4	J	128	132	Right-handed 310
Helix 50	AF5	J	133	136	Right-handed 310
Helix 51	AF6	J	137	147	Right-handed alpha
Helix 52	AF7	J	155	165	Right-handed alpha
Helix 53	AF8	J	169	172	Right-handed 310
Helix 54	AF9	J	173	187	Right-handed alpha
Helix 55	AG1	J	198	201	Right-handed 310
Helix 56	AG2	J	202	213	Right-handed alpha
Helix 57	AG3	J	217	229	Right-handed alpha
Helix 58	AG4	J	232	250	Right-handed alpha
Helix 59	AG5	J	263	274	Right-handed alpha
Helix 60	AG6	J	275	291	Right-handed alpha
Helix 61	AG7	K	4	14	Right-handed alpha
Helix 62	AG8	K	22	31	Right-handed alpha
Helix 63	AG9	K	33	43	Right-handed alpha
Helix 64	AH1	K	44	46	Right-handed 310
Helix 65	AH2	K	69	83	Right-handed alpha
Helix 66	AH3	K	84	87	Right-handed 310
Helix 67	AH4	K	101	107	Right-handed alpha
Helix 68	AH5	K	108	110	Right-handed 310
Helix 69	AH6	K	122	127	Right-handed alpha
Helix 70	AH7	K	128	138	Right-handed alpha
Helix 71	AH8	K	142	154	Right-handed alpha
Helix 72	AH9	K	165	174	Right-handed alpha
Helix 73	AI1	K	174	188	Right-handed alpha
Helix 74	AI2	K	206	220	Right-handed alpha
Helix 75	AI3	K	221	224	Right-handed 310
Helix 76	AI4	K	256	273	Right-handed alpha
Helix 77	AI5	K	277	292	Right-handed alpha
Helix 78	AI6	K	292	311	Right-handed alpha
Helix 79	AI7	L	8	18	Right-handed alpha
Helix 80	AI8	L	202	213	Right-handed alpha
Helix 81	AI9	L	217	230	Right-handed alpha
Helix 82	AJ1	L	236	251	Right-handed alpha
Helix 83	AJ2	L	263	274	Right-handed alpha
Helix 84	AJ3	L	276	291	Right-handed alpha
Helix 85	AJ4	P	4	14	Right-handed alpha
Helix 86	AJ5	P	22	31	Right-handed alpha
Helix 87	AJ6	P	33	44	Right-handed alpha
Helix 88	AJ7	P	69	83	Right-handed alpha
Helix 89	AJ8	P	84	87	Right-handed 310
Helix 90	AJ9	P	102	107	Right-handed alpha
Helix 91	AK1	P	108	110	Right-handed 310
Helix 92	AK2	P	122	127	Right-handed alpha
Helix 93	AK3	P	128	139	Right-handed alpha
Helix 94	AK4	P	142	154	Right-handed alpha
Helix 95	AK5	P	165	174	Right-handed alpha
Helix 96	AK6	P	175	187	Right-handed alpha
Helix 97	AK7	P	205	220	Right-handed alpha
Helix 98	AK8	P	221	224	Right-handed 310
Helix 99	AK9	P	256	273	Right-handed alpha
Helix 100	AL1	P	277	292	Right-handed alpha
Helix 101	AL2	P	292	310	Right-handed alpha
Helix 102	AL3	T	6	14	Right-handed alpha
Helix 103	AL4	T	44	54	Right-handed alpha
Helix 104	AL5	T	66	73	Right-handed alpha
Helix 105	AL6	T	81	89	Right-handed alpha
Helix 106	AL7	T	100	113	Right-handed alpha
Helix 107	AL8	T	113	119	Right-handed alpha
Helix 108	AL9	T	127	129	Right-handed 310
Helix 109	AM1	T	133	138	Right-handed alpha
Helix 110	AM2	T	138	147	Right-handed alpha
Helix 111	AM3	T	155	164	Right-handed alpha
Helix 112	AM4	T	169	172	Right-handed 310
Helix 113	AM5	T	173	188	Right-handed alpha
Helix 114	AM6	T	198	201	Right-handed 310
Helix 115	AM7	T	202	213	Right-handed alpha
Helix 116	AM8	T	217	229	Right-handed alpha
Helix 117	AM9	T	232	250	Right-handed alpha
Helix 118	AN1	T	263	272	Right-handed alpha
Helix 119	AN2	T	275	292	Right-handed alpha

There are 19 sheets in PDB entry 9JM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	53	first strand
Strand 2	A	63	68	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	195	first strand
Strand 2	A	198	203	anti-parallel
Strand 3	A	114	119	anti-parallel
Strand 4	A	233	235	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	243	first strand
Strand 2	A	246	248	anti-parallel
Strand 3	A	253	254	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	255	first strand
Strand 2	C	260	262	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	53	first strand
Strand 2	B	63	68	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	191	195	parallel
Strand 3	B	198	203	anti-parallel
Strand 4	B	114	119	anti-parallel
Strand 5	B	233	235	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	243	first strand
Strand 2	B	246	248	anti-parallel
Strand 3	B	253	254	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	59	62	first strand
Strand 2	J	30	35	parallel
Strand 3	J	93	96	parallel
Strand 4	J	120	125	parallel
Strand 5	J	151	154	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	253	256	first strand
Strand 2	J	259	262	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	48	52	first strand
Strand 2	K	64	68	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	191	195	first strand
Strand 2	K	198	203	anti-parallel
Strand 3	K	114	121	anti-parallel
Strand 4	K	226	227	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	247	248	first strand
Strand 2	K	253	254	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	253	256	first strand
Strand 2	L	259	262	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	48	52	first strand
Strand 2	P	64	68	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	191	195	first strand
Strand 2	P	198	203	anti-parallel
Strand 3	P	114	121	anti-parallel
Strand 4	P	226	227	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	191	195	first strand
Strand 2	P	198	203	anti-parallel
Strand 3	P	114	121	anti-parallel
Strand 4	P	233	235	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	242	243	first strand
Strand 2	P	246	248	anti-parallel
Strand 3	P	253	254	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	59	62	first strand
Strand 2	T	30	35	parallel
Strand 3	T	93	96	parallel
Strand 4	T	120	125	parallel
Strand 5	T	151	154	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	253	255	first strand
Strand 2	T	260	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JM0