Analysis of interatomic Contacts of Structural Units in PDB entry:
9JMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JMA entry

There are 2 chains in PDB entry 9JMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 306
B
 MET 1ARG 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9JMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
29 31Right-handed 310
Helix 3
AA3
A
45 53Right-handed alpha
Helix 4
AA4
A
67 80Right-handed alpha
Helix 5
AA5
A
102 109Right-handed alpha
Helix 6
AA6
A
125 132Right-handed 310
Helix 7
AA7
A
145 150Right-handed alpha
Helix 8
AA8
A
154 156Right-handed 310
Helix 9
AA9
A
162 167Right-handed alpha
Helix 10
AB1
A
177 188Right-handed alpha
Helix 11
AB2
A
217 238Right-handed alpha
Helix 12
AB3
A
242 250Right-handed alpha
Helix 13
AB4
A
250 265Right-handed alpha
Helix 14
AB5
A
272 285Right-handed alpha
Helix 15
AB6
A
291 305Right-handed alpha
Helix 16
AB7
B
12 25Right-handed alpha
Helix 17
AB8
B
29 31Right-handed 310
Helix 18
AB9
B
45 54Right-handed alpha
Helix 19
AC1
B
67 80Right-handed alpha
Helix 20
AC2
B
102 108Right-handed alpha
Helix 21
AC3
B
128 132Right-handed 310
Helix 22
AC4
B
145 150Right-handed alpha
Helix 23
AC5
B
154 156Right-handed 310
Helix 24
AC6
B
177 188Right-handed alpha
Helix 25
AC7
B
209 214Right-handed 310
Helix 26
AC8
B
218 238Right-handed alpha
Helix 27
AC9
B
242 249Right-handed alpha
Helix 28
AD1
B
250 265Right-handed alpha
Helix 29
AD2
B
272 284Right-handed alpha
Helix 30
AD3
B
291 304Right-handed alpha
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There are 4 sheets in PDB entry 9JMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
33 39parallel
Strand 3
A
3 9parallel
Strand 4
A
84 87parallel
Strand 5
A
158 161anti-parallel
Strand 6
A
112 120anti-parallel
Strand 7
A
194 205parallel
Strand 8
A
92 93anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
33 39parallel
Strand 3
A
3 9parallel
Strand 4
A
84 87parallel
Strand 5
A
158 161anti-parallel
Strand 6
A
112 120anti-parallel
Strand 7
A
134 138anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
33 39parallel
Strand 3
B
3 9parallel
Strand 4
B
84 87parallel
Strand 5
B
158 161anti-parallel
Strand 6
B
112 120anti-parallel
Strand 7
B
194 205parallel
Strand 8
B
92 93anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
33 39parallel
Strand 3
B
3 9parallel
Strand 4
B
84 87parallel
Strand 5
B
158 161anti-parallel
Strand 6
B
112 120anti-parallel
Strand 7
B
134 138anti-parallel
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