Analysis of interatomic Contacts of Structural Units in PDB entry:
9JMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JMB entry

There are 3 chains in PDB entry 9JMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 103ARG 721
H
 GLU 1SER 122
L
 GLN 1ARG 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9JMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
188 195Right-handed alpha
Helix 2
AA2
A
195 200Right-handed alpha
Helix 3
AA3
A
220 222Right-handed 310
Helix 4
AA4
A
301 305Right-handed 310
Helix 5
AA5
A
310 312Right-handed 310
Helix 6
AA6
A
398 402Right-handed 310
Helix 7
AA7
A
406 421Right-handed alpha
Helix 8
AA8
A
498 532Right-handed alpha
Helix 9
AA9
A
532 543Right-handed alpha
Helix 10
AB1
A
543 553Right-handed alpha
Helix 11
AB2
A
687 694Right-handed alpha
Helix 12
AB3
A
698 707Right-handed alpha
Helix 13
AB4
A
708 714Right-handed alpha
Helix 14
AB5
H
28 32Right-handed 310
Helix 15
AB6
H
62 65Right-handed 310
Helix 16
AB7
H
87 91Right-handed 310
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There are 17 sheets in PDB entry 9JMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
567 570anti-parallel
Strand 3
A
557 558anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 392first strand
Strand 2
A
379 383anti-parallel
Strand 3
A
361 374anti-parallel
Strand 4
A
137 147anti-parallel
Strand 5
A
443 452anti-parallel
Strand 6
A
428 430anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 392first strand
Strand 2
A
379 383anti-parallel
Strand 3
A
361 374anti-parallel
Strand 4
A
137 147anti-parallel
Strand 5
A
443 452anti-parallel
Strand 6
A
435 439anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 186first strand
Strand 2
A
152 170anti-parallel
Strand 3
A
258 275anti-parallel
Strand 4
A
282 284anti-parallel
Strand 5
A
289 290anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
241 243anti-parallel
Strand 3
A
258 275anti-parallel
Strand 4
A
152 170anti-parallel
Strand 5
A
346 350anti-parallel
Strand 6
A
335 341anti-parallel
Strand 7
A
314 320anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
226 228anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 210first strand
Strand 2
A
213 218anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 580first strand
Strand 2
A
598 601anti-parallel
Strand 3
A
610 614anti-parallel
Strand 4
A
620 621anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 594first strand
Strand 2
A
627 629anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 639first strand
Strand 2
A
644 648anti-parallel
Strand 3
A
652 655anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
119 120parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
46 51anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
111 112anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
46 51anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
116 117anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
19 29anti-parallel
Strand 3
L
61 74anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
101 105parallel
Strand 3
L
84 89anti-parallel
Strand 4
L
33 37anti-parallel
Strand 5
L
44 48anti-parallel
Strand 6
L
52 53anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
101 105parallel
Strand 3
L
84 89anti-parallel
Strand 4
L
96 97anti-parallel
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