Analysis of interatomic Contacts of Structural Units in PDB entry:
9JME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JME entry

There are 3 chains in PDB entry 9JME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 1SER 122
L
 GLN 1ARG 107
A
 PRO 104ILE 710
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9JME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
62 65Right-handed 310
Helix 3
AA3
H
87 91Right-handed 310
Helix 4
AA4
L
78 82Right-handed 310
Helix 5
AA5
A
180 187Right-handed alpha
Helix 6
AA6
A
187 192Right-handed alpha
Helix 7
AA7
A
212 214Right-handed 310
Helix 8
AA8
A
293 297Right-handed 310
Helix 9
AA9
A
302 304Right-handed 310
Helix 10
AB1
A
346 350Right-handed 310
Helix 11
AB2
A
398 416Right-handed alpha
Helix 12
AB3
A
488 522Right-handed alpha
Helix 13
AB4
A
522 530Right-handed alpha
Helix 14
AB5
A
533 543Right-handed alpha
Helix 15
AB6
A
677 683Right-handed alpha
Helix 16
AB7
A
688 697Right-handed alpha
Helix 17
AB8
A
698 704Right-handed alpha
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There are 14 sheets in PDB entry 9JME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
116 120parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
116 120parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
111 112anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
69 74anti-parallel
Strand 4
L
61 66anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
101 105parallel
Strand 3
L
84 89anti-parallel
Strand 4
L
33 37anti-parallel
Strand 5
L
44 48anti-parallel
Strand 6
L
52 53anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
101 105parallel
Strand 3
L
84 89anti-parallel
Strand 4
L
96 97anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
554 558anti-parallel
Strand 3
A
546 550anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 359first strand
Strand 2
A
132 139anti-parallel
Strand 3
A
435 444anti-parallel
Strand 4
A
420 422anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 359first strand
Strand 2
A
132 139anti-parallel
Strand 3
A
435 444anti-parallel
Strand 4
A
427 431anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 178first strand
Strand 2
A
144 162anti-parallel
Strand 3
A
250 267anti-parallel
Strand 4
A
274 276anti-parallel
Strand 5
A
281 282anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
233 235anti-parallel
Strand 3
A
250 267anti-parallel
Strand 4
A
144 162anti-parallel
Strand 5
A
338 342anti-parallel
Strand 6
A
327 333anti-parallel
Strand 7
A
306 312anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
218 220anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 201first strand
Strand 2
A
206 210anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 366first strand
Strand 2
A
370 375anti-parallel
Strand 3
A
380 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il