Analysis of interatomic Contacts of Structural Units in PDB entry:
9JMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JMF entry

There are 3 chains in PDB entry 9JMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 21	SER 1215
B	ILE 21	SER 1215
C	ILE 21	SER 1215

There are 96 helices in PDB entry 9JMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	43	Right-handed 310
Helix 2	AA2	A	107	111	Right-handed 310
Helix 3	AA3	A	220	225	Right-handed alpha
Helix 4	AA4	A	225	233	Right-handed alpha
Helix 5	AA5	A	345	355	Right-handed alpha
Helix 6	AA6	A	388	393	Right-handed alpha
Helix 7	AA7	A	413	420	Right-handed alpha
Helix 8	AA8	A	432	438	Right-handed alpha
Helix 9	AA9	A	452	460	Right-handed 310
Helix 10	AB1	A	465	471	Right-handed alpha
Helix 11	AB2	A	523	533	Right-handed alpha
Helix 12	AB3	A	594	598	Right-handed 310
Helix 13	AB4	A	676	681	Right-handed alpha
Helix 14	AB5	A	682	687	Right-handed 310
Helix 15	AB6	A	688	697	Right-handed alpha
Helix 16	AB7	A	740	744	Right-handed 310
Helix 17	AB8	A	796	802	Right-handed alpha
Helix 18	AB9	A	805	813	Right-handed alpha
Helix 19	AC1	A	814	816	Right-handed 310
Helix 20	AC2	A	817	845	Right-handed alpha
Helix 21	AC3	A	867	872	Right-handed alpha
Helix 22	AC4	A	879	889	Right-handed alpha
Helix 23	AC5	A	899	906	Right-handed alpha
Helix 24	AC6	A	912	917	Right-handed alpha
Helix 25	AC7	A	917	922	Right-handed alpha
Helix 26	AC8	A	931	945	Right-handed alpha
Helix 27	AC9	A	962	975	Right-handed alpha
Helix 28	AD1	A	977	984	Right-handed alpha
Helix 29	AD2	A	984	998	Right-handed alpha
Helix 30	AD3	A	1007	1030	Right-handed alpha
Helix 31	AD4	A	1041	1049	Right-handed alpha
Helix 32	AD5	A	1050	1097	Right-handed alpha
Helix 33	AD6	A	1210	1214	Right-handed 310
Helix 34	AD7	B	40	45	Right-handed alpha
Helix 35	AD8	B	107	111	Right-handed 310
Helix 36	AD9	B	225	234	Right-handed alpha
Helix 37	AE1	B	274	278	Right-handed 310
Helix 38	AE2	B	345	353	Right-handed alpha
Helix 39	AE3	B	354	356	Right-handed 310
Helix 40	AE4	B	388	393	Right-handed alpha
Helix 41	AE5	B	413	418	Right-handed alpha
Helix 42	AE6	B	432	437	Right-handed alpha
Helix 43	AE7	B	452	459	Right-handed 310
Helix 44	AE8	B	465	471	Right-handed alpha
Helix 45	AE9	B	523	533	Right-handed alpha
Helix 46	AF1	B	557	560	Right-handed 310
Helix 47	AF2	B	606	609	Right-handed 310
Helix 48	AF3	B	676	684	Right-handed alpha
Helix 49	AF4	B	685	687	Right-handed 310
Helix 50	AF5	B	688	696	Right-handed alpha
Helix 51	AF6	B	740	744	Right-handed 310
Helix 52	AF7	B	805	811	Right-handed alpha
Helix 53	AF8	B	812	816	Right-handed 310
Helix 54	AF9	B	821	845	Right-handed alpha
Helix 55	AG1	B	879	888	Right-handed alpha
Helix 56	AG2	B	898	906	Right-handed alpha
Helix 57	AG3	B	912	917	Right-handed alpha
Helix 58	AG4	B	917	922	Right-handed alpha
Helix 59	AG5	B	931	945	Right-handed alpha
Helix 60	AG6	B	962	975	Right-handed alpha
Helix 61	AG7	B	977	984	Right-handed alpha
Helix 62	AG8	B	984	998	Right-handed alpha
Helix 63	AG9	B	1007	1029	Right-handed alpha
Helix 64	AH1	B	1041	1047	Right-handed alpha
Helix 65	AH2	B	1050	1097	Right-handed alpha
Helix 66	AH3	C	39	43	Right-handed 310
Helix 67	AH4	C	222	224	Right-handed 310
Helix 68	AH5	C	225	235	Right-handed alpha
Helix 69	AH6	C	345	353	Right-handed alpha
Helix 70	AH7	C	388	393	Right-handed alpha
Helix 71	AH8	C	413	420	Right-handed alpha
Helix 72	AH9	C	432	437	Right-handed alpha
Helix 73	AI1	C	452	459	Right-handed 310
Helix 74	AI2	C	465	471	Right-handed alpha
Helix 75	AI3	C	523	533	Right-handed alpha
Helix 76	AI4	C	557	560	Right-handed 310
Helix 77	AI5	C	594	598	Right-handed 310
Helix 78	AI6	C	676	681	Right-handed alpha
Helix 79	AI7	C	683	687	Right-handed 310
Helix 80	AI8	C	688	696	Right-handed alpha
Helix 81	AI9	C	740	744	Right-handed 310
Helix 82	AJ1	C	796	802	Right-handed alpha
Helix 83	AJ2	C	805	812	Right-handed alpha
Helix 84	AJ3	C	813	816	Right-handed 310
Helix 85	AJ4	C	817	843	Right-handed alpha
Helix 86	AJ5	C	879	888	Right-handed alpha
Helix 87	AJ6	C	898	906	Right-handed alpha
Helix 88	AJ7	C	912	917	Right-handed alpha
Helix 89	AJ8	C	917	922	Right-handed alpha
Helix 90	AJ9	C	931	945	Right-handed alpha
Helix 91	AK1	C	962	974	Right-handed alpha
Helix 92	AK2	C	977	984	Right-handed alpha
Helix 93	AK3	C	984	998	Right-handed alpha
Helix 94	AK4	C	1007	1028	Right-handed alpha
Helix 95	AK5	C	1041	1049	Right-handed alpha
Helix 96	AK6	C	1052	1097	Right-handed alpha

There are 47 sheets in PDB entry 9JMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	104	105	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	79	first strand
Strand 2	A	322	330	anti-parallel
Strand 3	A	336	341	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	301	303	parallel
Strand 3	A	87	93	parallel
Strand 4	A	313	320	anti-parallel
Strand 5	A	118	123	anti-parallel
Strand 6	A	255	262	anti-parallel
Strand 7	A	265	270	anti-parallel
Strand 8	A	282	287	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	295	298	anti-parallel
Strand 3	A	149	152	anti-parallel
Strand 4	A	170	176	anti-parallel
Strand 5	A	182	192	anti-parallel
Strand 6	A	235	247	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	156	first strand
Strand 2	A	166	168	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	365	first strand
Strand 2	A	658	662	anti-parallel
Strand 3	A	667	671	anti-parallel
Strand 4	A	710	712	anti-parallel
Strand 5	A	703	705	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	378	first strand
Strand 2	A	602	605	parallel
Strand 3	A	610	618	anti-parallel
Strand 4	A	646	650	anti-parallel
Strand 5	A	636	640	anti-parallel
Strand 6	A	628	630	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	407	first strand
Strand 2	A	443	450	anti-parallel
Strand 3	A	564	573	anti-parallel
Strand 4	A	480	487	anti-parallel
Strand 5	A	422	429	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	A	582	583	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	500	507	anti-parallel
Strand 3	A	547	555	anti-parallel
Strand 4	A	540	544	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	714	721	first strand
Strand 2	A	748	753	parallel
Strand 3	A	732	735	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	759	760	first strand
Strand 2	B	848	849	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1112	1121	first strand
Strand 2	A	1124	1143	anti-parallel
Strand 3	A	1161	1164	anti-parallel
Strand 4	A	1176	1179	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1112	1121	first strand
Strand 2	A	1124	1143	anti-parallel
Strand 3	A	769	786	anti-parallel
Strand 4	B	958	959	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	793	795	first strand
Strand 2	A	923	925	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	848	849	first strand
Strand 2	C	759	760	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	958	959	first strand
Strand 2	C	769	786	anti-parallel
Strand 3	C	1124	1143	anti-parallel
Strand 4	C	1112	1121	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	958	959	first strand
Strand 2	C	769	786	anti-parallel
Strand 3	C	1124	1143	anti-parallel
Strand 4	C	1162	1164	anti-parallel
Strand 5	C	1176	1178	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1193	1196	first strand
Strand 2	A	1155	1158	anti-parallel
Strand 3	A	1146	1148	anti-parallel
Strand 4	A	1203	1205	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	79	first strand
Strand 2	B	322	330	anti-parallel
Strand 3	B	336	341	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	91	first strand
Strand 2	B	314	320	anti-parallel
Strand 3	B	118	123	anti-parallel
Strand 4	B	255	262	anti-parallel
Strand 5	B	265	270	anti-parallel
Strand 6	B	282	287	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	295	298	anti-parallel
Strand 3	B	149	157	anti-parallel
Strand 4	B	164	177	anti-parallel
Strand 5	B	182	188	anti-parallel
Strand 6	B	243	247	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	235	236	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	301	303	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	366	first strand
Strand 2	B	657	661	anti-parallel
Strand 3	B	668	673	anti-parallel
Strand 4	B	709	712	anti-parallel
Strand 5	B	703	705	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	377	first strand
Strand 2	B	601	604	parallel
Strand 3	B	611	617	anti-parallel
Strand 4	B	646	650	anti-parallel
Strand 5	B	636	640	anti-parallel
Strand 6	B	628	630	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	407	first strand
Strand 2	B	443	450	anti-parallel
Strand 3	B	564	573	anti-parallel
Strand 4	B	480	487	anti-parallel
Strand 5	B	421	428	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	412	first strand
Strand 2	B	582	583	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	513	first strand
Strand 2	B	500	507	anti-parallel
Strand 3	B	547	555	anti-parallel
Strand 4	B	540	544	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	714	716	first strand
Strand 2	B	748	750	parallel
Strand 3	B	734	735	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	759	760	first strand
Strand 2	C	848	849	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1112	1121	first strand
Strand 2	B	1124	1143	anti-parallel
Strand 3	B	1161	1164	anti-parallel
Strand 4	B	1176	1179	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1112	1121	first strand
Strand 2	B	1124	1143	anti-parallel
Strand 3	B	769	786	anti-parallel
Strand 4	C	958	959	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	793	795	first strand
Strand 2	B	923	925	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1193	1196	first strand
Strand 2	B	1155	1158	anti-parallel
Strand 3	B	1146	1148	anti-parallel
Strand 4	B	1203	1205	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	79	first strand
Strand 2	C	322	330	anti-parallel
Strand 3	C	336	340	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	316	320	anti-parallel
Strand 3	C	118	123	anti-parallel
Strand 4	C	255	262	anti-parallel
Strand 5	C	265	270	anti-parallel
Strand 6	C	282	287	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	295	298	anti-parallel
Strand 3	C	149	157	anti-parallel
Strand 4	C	164	177	anti-parallel
Strand 5	C	182	188	anti-parallel
Strand 6	C	240	247	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	211	first strand
Strand 2	C	301	303	parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	365	first strand
Strand 2	C	658	662	anti-parallel
Strand 3	C	667	671	anti-parallel
Strand 4	C	709	712	anti-parallel
Strand 5	C	704	706	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	601	606	parallel
Strand 3	C	611	617	anti-parallel
Strand 4	C	647	651	anti-parallel
Strand 5	C	636	639	anti-parallel
Strand 6	C	628	630	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	407	first strand
Strand 2	C	443	450	anti-parallel
Strand 3	C	564	573	anti-parallel
Strand 4	C	480	487	anti-parallel
Strand 5	C	421	429	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	412	first strand
Strand 2	C	582	583	parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	513	first strand
Strand 2	C	500	507	anti-parallel
Strand 3	C	547	555	anti-parallel
Strand 4	C	540	544	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	714	721	first strand
Strand 2	C	748	753	parallel
Strand 3	C	732	735	anti-parallel
Strand 4	C	727	729	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	795	first strand
Strand 2	C	923	926	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1193	1196	first strand
Strand 2	C	1155	1158	anti-parallel
Strand 3	C	1146	1148	anti-parallel
Strand 4	C	1203	1205	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JMF