Analysis of interatomic Contacts of Structural Units in PDB entry:
9JMH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JMH entry

There are 3 chains in PDB entry 9JMH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 18	ASN 1218
B	ASP 18	ASN 1218
C	ASP 18	ASN 1218

There are 80 helices in PDB entry 9JMH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	41	Right-handed 310
Helix 2	AA2	A	49	53	Right-handed 310
Helix 3	AA3	A	230	238	Right-handed alpha
Helix 4	AA4	A	350	360	Right-handed alpha
Helix 5	AA5	A	393	398	Right-handed alpha
Helix 6	AA6	A	418	426	Right-handed alpha
Helix 7	AA7	A	437	443	Right-handed alpha
Helix 8	AA8	A	457	465	Right-handed 310
Helix 9	AA9	A	470	476	Right-handed alpha
Helix 10	AB1	A	677	682	Right-handed alpha
Helix 11	AB2	A	797	804	Right-handed alpha
Helix 12	AB3	A	806	814	Right-handed alpha
Helix 13	AB4	A	816	845	Right-handed alpha
Helix 14	AB5	A	880	889	Right-handed alpha
Helix 15	AB6	A	899	906	Right-handed alpha
Helix 16	AB7	A	917	923	Right-handed alpha
Helix 17	AB8	A	932	946	Right-handed alpha
Helix 18	AB9	A	963	974	Right-handed alpha
Helix 19	AC1	A	978	985	Right-handed alpha
Helix 20	AC2	A	985	998	Right-handed alpha
Helix 21	AC3	A	1008	1031	Right-handed alpha
Helix 22	AC4	A	1032	1034	Right-handed 310
Helix 23	AC5	A	1042	1050	Right-handed alpha
Helix 24	AC6	A	1051	1098	Right-handed alpha
Helix 25	AC7	A	1213	1217	Right-handed 310
Helix 26	AC8	B	37	40	Right-handed 310
Helix 27	AC9	B	49	53	Right-handed 310
Helix 28	AD1	B	230	239	Right-handed alpha
Helix 29	AD2	B	350	360	Right-handed alpha
Helix 30	AD3	B	393	398	Right-handed alpha
Helix 31	AD4	B	418	426	Right-handed alpha
Helix 32	AD5	B	437	443	Right-handed alpha
Helix 33	AD6	B	457	461	Right-handed 310
Helix 34	AD7	B	470	476	Right-handed alpha
Helix 35	AD8	B	677	682	Right-handed alpha
Helix 36	AD9	B	797	804	Right-handed alpha
Helix 37	AE1	B	806	814	Right-handed alpha
Helix 38	AE2	B	817	845	Right-handed alpha
Helix 39	AE3	B	880	890	Right-handed alpha
Helix 40	AE4	B	899	907	Right-handed alpha
Helix 41	AE5	B	917	923	Right-handed alpha
Helix 42	AE6	B	932	946	Right-handed alpha
Helix 43	AE7	B	963	975	Right-handed alpha
Helix 44	AE8	B	978	985	Right-handed alpha
Helix 45	AE9	B	985	1000	Right-handed alpha
Helix 46	AF1	B	1001	1003	Right-handed 310
Helix 47	AF2	B	1008	1031	Right-handed alpha
Helix 48	AF3	B	1032	1034	Right-handed 310
Helix 49	AF4	B	1042	1050	Right-handed alpha
Helix 50	AF5	B	1051	1098	Right-handed alpha
Helix 51	AF6	B	1213	1217	Right-handed 310
Helix 52	AF7	C	36	41	Right-handed alpha
Helix 53	AF8	C	49	53	Right-handed 310
Helix 54	AF9	C	230	239	Right-handed alpha
Helix 55	AG1	C	311	315	Right-handed 310
Helix 56	AG2	C	350	360	Right-handed alpha
Helix 57	AG3	C	393	399	Right-handed alpha
Helix 58	AG4	C	418	426	Right-handed alpha
Helix 59	AG5	C	437	443	Right-handed alpha
Helix 60	AG6	C	457	465	Right-handed 310
Helix 61	AG7	C	470	476	Right-handed alpha
Helix 62	AG8	C	531	536	Right-handed alpha
Helix 63	AG9	C	587	589	Right-handed 310
Helix 64	AH1	C	677	682	Right-handed alpha
Helix 65	AH2	C	797	804	Right-handed alpha
Helix 66	AH3	C	806	814	Right-handed alpha
Helix 67	AH4	C	816	845	Right-handed alpha
Helix 68	AH5	C	880	890	Right-handed alpha
Helix 69	AH6	C	899	907	Right-handed alpha
Helix 70	AH7	C	918	923	Right-handed alpha
Helix 71	AH8	C	932	946	Right-handed alpha
Helix 72	AH9	C	963	975	Right-handed alpha
Helix 73	AI1	C	978	985	Right-handed alpha
Helix 74	AI2	C	985	1001	Right-handed alpha
Helix 75	AI3	C	1002	1004	Right-handed 310
Helix 76	AI4	C	1008	1031	Right-handed alpha
Helix 77	AI5	C	1032	1034	Right-handed 310
Helix 78	AI6	C	1042	1050	Right-handed alpha
Helix 79	AI7	C	1054	1099	Right-handed alpha
Helix 80	AI8	C	1213	1217	Right-handed 310

There are 54 sheets in PDB entry 9JMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	107	109	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	C	629	631	parallel
Strand 3	C	637	641	anti-parallel
Strand 4	C	647	651	anti-parallel
Strand 5	C	610	619	anti-parallel
Strand 6	C	602	607	anti-parallel
Strand 7	C	381	384	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	76	first strand
Strand 2	A	321	335	anti-parallel
Strand 3	A	123	127	anti-parallel
Strand 4	A	260	267	anti-parallel
Strand 5	A	270	275	anti-parallel
Strand 6	A	287	292	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	321	335	anti-parallel
Strand 3	A	341	346	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	300	303	anti-parallel
Strand 3	A	155	162	anti-parallel
Strand 4	A	171	182	anti-parallel
Strand 5	A	187	197	anti-parallel
Strand 6	A	240	252	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	146	150	anti-parallel
Strand 3	A	317	319	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	216	first strand
Strand 2	A	306	308	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	371	first strand
Strand 2	A	658	663	anti-parallel
Strand 3	A	668	674	anti-parallel
Strand 4	A	710	713	anti-parallel
Strand 5	A	704	706	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	384	first strand
Strand 2	A	602	607	parallel
Strand 3	A	610	615	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	412	first strand
Strand 2	A	448	455	anti-parallel
Strand 3	A	566	575	anti-parallel
Strand 4	A	485	492	anti-parallel
Strand 5	A	427	434	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	584	585	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	520	first strand
Strand 2	A	503	512	anti-parallel
Strand 3	A	553	561	anti-parallel
Strand 4	A	545	548	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	631	first strand
Strand 2	A	637	641	anti-parallel
Strand 3	A	647	649	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	722	first strand
Strand 2	A	749	754	parallel
Strand 3	A	736	739	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	760	761	first strand
Strand 2	B	849	850	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1113	1122	first strand
Strand 2	A	1125	1144	anti-parallel
Strand 3	A	1162	1165	anti-parallel
Strand 4	A	1179	1182	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1113	1122	first strand
Strand 2	A	1125	1144	anti-parallel
Strand 3	A	770	788	anti-parallel
Strand 4	B	959	960	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	794	796	first strand
Strand 2	A	924	926	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	C	760	761	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	959	960	first strand
Strand 2	C	770	788	anti-parallel
Strand 3	C	1125	1144	anti-parallel
Strand 4	C	1113	1121	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	959	960	first strand
Strand 2	C	770	788	anti-parallel
Strand 3	C	1125	1144	anti-parallel
Strand 4	C	1162	1165	anti-parallel
Strand 5	C	1179	1182	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1196	1199	first strand
Strand 2	A	1156	1159	anti-parallel
Strand 3	A	1147	1148	anti-parallel
Strand 4	A	1206	1207	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	107	109	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	75	first strand
Strand 2	B	327	335	anti-parallel
Strand 3	B	341	346	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	320	325	anti-parallel
Strand 3	B	122	129	anti-parallel
Strand 4	B	260	267	anti-parallel
Strand 5	B	270	275	anti-parallel
Strand 6	B	287	292	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	300	304	anti-parallel
Strand 3	B	154	162	anti-parallel
Strand 4	B	171	182	anti-parallel
Strand 5	B	187	197	anti-parallel
Strand 6	B	240	252	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	146	149	anti-parallel
Strand 3	B	317	318	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	216	first strand
Strand 2	B	306	308	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	371	first strand
Strand 2	B	658	663	anti-parallel
Strand 3	B	668	673	anti-parallel
Strand 4	B	712	713	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	384	first strand
Strand 2	B	602	607	parallel
Strand 3	B	610	615	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	412	first strand
Strand 2	B	448	455	anti-parallel
Strand 3	B	566	575	anti-parallel
Strand 4	B	485	492	anti-parallel
Strand 5	B	427	434	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	417	first strand
Strand 2	B	584	585	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	520	first strand
Strand 2	B	504	514	anti-parallel
Strand 3	B	553	560	anti-parallel
Strand 4	B	544	547	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	647	648	first strand
Strand 2	B	637	641	anti-parallel
Strand 3	B	629	631	anti-parallel
Strand 4	C	63	64	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	722	first strand
Strand 2	B	749	754	parallel
Strand 3	B	736	739	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	760	762	first strand
Strand 2	C	849	851	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1113	1121	first strand
Strand 2	B	1125	1144	anti-parallel
Strand 3	B	1163	1165	anti-parallel
Strand 4	B	1179	1181	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1113	1121	first strand
Strand 2	B	1125	1144	anti-parallel
Strand 3	B	770	788	anti-parallel
Strand 4	C	959	961	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	794	796	first strand
Strand 2	B	924	926	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1196	1199	first strand
Strand 2	B	1156	1159	anti-parallel
Strand 3	B	1147	1148	anti-parallel
Strand 4	B	1206	1207	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	107	109	parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	75	first strand
Strand 2	C	327	335	anti-parallel
Strand 3	C	341	346	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	320	325	anti-parallel
Strand 3	C	122	129	anti-parallel
Strand 4	C	260	267	anti-parallel
Strand 5	C	270	275	anti-parallel
Strand 6	C	287	292	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	135	first strand
Strand 2	C	146	149	anti-parallel
Strand 3	C	317	318	parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	243	first strand
Strand 2	C	187	197	anti-parallel
Strand 3	C	249	252	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	243	first strand
Strand 2	C	187	197	anti-parallel
Strand 3	C	171	182	anti-parallel
Strand 4	C	155	162	anti-parallel
Strand 5	C	300	303	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	216	first strand
Strand 2	C	306	308	parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	371	first strand
Strand 2	C	658	663	anti-parallel
Strand 3	C	668	674	anti-parallel
Strand 4	C	710	713	anti-parallel
Strand 5	C	705	707	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	412	first strand
Strand 2	C	448	455	anti-parallel
Strand 3	C	566	575	anti-parallel
Strand 4	C	485	492	anti-parallel
Strand 5	C	427	434	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	417	first strand
Strand 2	C	584	585	parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	519	520	first strand
Strand 2	C	504	512	anti-parallel
Strand 3	C	553	560	anti-parallel
Strand 4	C	545	548	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	722	first strand
Strand 2	C	750	754	parallel
Strand 3	C	735	738	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	794	796	first strand
Strand 2	C	924	926	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1196	1199	first strand
Strand 2	C	1156	1159	anti-parallel
Strand 3	C	1147	1148	anti-parallel
Strand 4	C	1206	1207	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JMH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JMH